Strain Fitness in Escherichia coli BL21 around ECD_01590

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01589 and ECD_01590 are separated by 174 nucleotidesECD_01590 and ECD_01591 are separated by 9 nucleotides ECD_01589: ECD_01589 - transcriptional repressor of Mal regulon, at 1,643,348 to 1,644,376 _01589 ECD_01590: ECD_01590 - maltose and glucose-specific PTS enzyme IIB component and IIC component, at 1,644,551 to 1,646,143 _01590 ECD_01591: ECD_01591 - PLP-dependent beta-cystathionase and maltose regulon regulator, at 1,646,153 to 1,647,325 _01591 Position (kb) 1644 1645 1646 1647Strain fitness (log2 ratio) -2 -1 0 1 2at 1644.003 kb on - strand, within ECD_01589at 1644.318 kb on - strandat 1644.679 kb on + strandat 1644.949 kb on + strand, within ECD_01590at 1644.954 kb on + strand, within ECD_01590at 1645.297 kb on + strand, within ECD_01590at 1645.475 kb on - strand, within ECD_01590at 1645.691 kb on - strand, within ECD_01590at 1645.742 kb on + strand, within ECD_01590at 1645.743 kb on - strand, within ECD_01590at 1645.743 kb on - strand, within ECD_01590at 1645.889 kb on - strand, within ECD_01590at 1646.046 kb on + strandat 1646.046 kb on + strandat 1646.047 kb on - strandat 1646.128 kb on + strandat 1646.128 kb on + strandat 1646.447 kb on - strand, within ECD_01591at 1646.526 kb on - strand, within ECD_01591at 1647.054 kb on - strand, within ECD_01591

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,644,003 - ECD_01589 0.64 -0.3
1,644,318 - -0.7
1,644,679 + +0.2
1,644,949 + ECD_01590 0.25 -1.9
1,644,954 + ECD_01590 0.25 +0.3
1,645,297 + ECD_01590 0.47 -0.5
1,645,475 - ECD_01590 0.58 -2.0
1,645,691 - ECD_01590 0.72 -0.2
1,645,742 + ECD_01590 0.75 +1.9
1,645,743 - ECD_01590 0.75 -0.6
1,645,743 - ECD_01590 0.75 -0.1
1,645,889 - ECD_01590 0.84 -1.1
1,646,046 + +2.6
1,646,046 + +0.6
1,646,047 - -0.7
1,646,128 + +1.4
1,646,128 + +1.0
1,646,447 - ECD_01591 0.25 -1.6
1,646,526 - ECD_01591 0.32 -2.1
1,647,054 - ECD_01591 0.77 -0.7

Or see this region's nucleotide sequence