Strain Fitness in Escherichia coli BL21 around ECD_01588

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01587 and ECD_01588 are separated by 220 nucleotidesECD_01588 and ECD_01589 are separated by 110 nucleotides ECD_01587: ECD_01587 - transcriptional repressor, at 1,641,659 to 1,642,249 _01587 ECD_01588: ECD_01588 - 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent, at 1,642,470 to 1,643,237 _01588 ECD_01589: ECD_01589 - transcriptional repressor of Mal regulon, at 1,643,348 to 1,644,376 _01589 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -1 0 1at 1641.872 kb on - strand, within ECD_01587at 1642.469 kb on - strandat 1643.484 kb on - strand, within ECD_01589at 1644.003 kb on - strand, within ECD_01589

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,641,872 - ECD_01587 0.36 +0.7
1,642,469 - -0.2
1,643,484 - ECD_01589 0.13 +1.0
1,644,003 - ECD_01589 0.64 -0.3

Or see this region's nucleotide sequence