Strain Fitness in Escherichia coli BL21 around ECD_01530

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01528 and ECD_01529 are separated by 14 nucleotidesECD_01529 and ECD_01530 are separated by 73 nucleotidesECD_01530 and ECD_01531 are separated by 66 nucleotidesECD_01531 and ECD_01532 are separated by 216 nucleotidesECD_01532 and ECD_01533 are separated by 211 nucleotidesECD_01533 and ECD_01535 overlap by 40 nucleotides ECD_01528: ECD_01528 - antitermination protein Q-like protein from lambdoid prophage DLP12, at 1,589,208 to 1,589,588 _01528 ECD_01529: ECD_01529 - Qin prophage; uncharacterized protein, at 1,589,603 to 1,590,181 _01529 ECD_01530: ECD_01530 - hypothetical protein, at 1,590,255 to 1,590,533 _01530 ECD_01531: ECD_01531 - Qin prophage; uncharacterized protein, at 1,590,600 to 1,590,851 _01531 ECD_01532: ECD_01532 - Qin prophage; small toxic polypeptide, at 1,591,068 to 1,591,223 _01532 ECD_01533: ECD_01533 - hypothetical protein, at 1,591,435 to 1,591,524 _01533 ECD_01535: ECD_01535 - hypothetical protein, at 1,591,485 to 1,591,844 _01535 Position (kb) 1590 1591Strain fitness (log2 ratio) -1 0 1at 1589.853 kb on + strand, within ECD_01529at 1589.854 kb on - strand, within ECD_01529at 1590.756 kb on - strand, within ECD_01531at 1591.201 kb on - strand, within ECD_01532at 1591.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,589,853 + ECD_01529 0.43 -0.9
1,589,854 - ECD_01529 0.43 +0.1
1,590,756 - ECD_01531 0.62 -0.2
1,591,201 - ECD_01532 0.85 +1.1
1,591,408 - +0.9

Or see this region's nucleotide sequence