Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01371 and ECD_01372 are separated by 169 nucleotides ECD_01372 and ECD_01373 overlap by 82 nucleotides ECD_01373 and ECD_01374 are separated by 98 nucleotides ECD_01374 and ECD_01375 are separated by 244 nucleotides ECD_01375 and ECD_01376 are separated by 71 nucleotides ECD_01376 and ECD_01377 overlap by 110 nucleotides
ECD_01371: ECD_01371 - glyceraldehyde-3-phosphate dehydrogenase, at 1,442,997 to 1,443,998
_01371
ECD_01372: ECD_01372 - IS1 protein InsA, at 1,444,168 to 1,444,443
_01372
ECD_01373: ECD_01373 - IS1 protein InsB, at 1,444,362 to 1,444,865
_01373
ECD_01374: ECD_01374 - cytochrome b561, at 1,444,964 to 1,445,494
_01374
ECD_01375: ECD_01375 - putative periplasmic protein, at 1,445,739 to 1,445,912
_01375
ECD_01376: ECD_01376 - toxic polypeptide, small, at 1,445,984 to 1,446,133
_01376
ECD_01377: ECD_01377 - regulatory peptide, at 1,446,024 to 1,446,191
_01377
Position (kb) 1444
1445
1446 Strain fitness (log2 ratio) -1
0
1
2
3 at 1445.159 kb on + strand, within ECD_01374 at 1445.182 kb on + strand, within ECD_01374 at 1445.182 kb on + strand, within ECD_01374 at 1445.279 kb on + strand, within ECD_01374 at 1445.279 kb on + strand, within ECD_01374 at 1445.356 kb on + strand, within ECD_01374 at 1445.356 kb on + strand, within ECD_01374 at 1445.694 kb on + strand at 1445.756 kb on + strand at 1445.879 kb on + strand, within ECD_01375 at 1445.879 kb on + strand, within ECD_01375 at 1446.097 kb on + strand at 1446.183 kb on + strand at 1446.215 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 1,445,159 + ECD_01374 0.37 +0.4 1,445,182 + ECD_01374 0.41 -1.4 1,445,182 + ECD_01374 0.41 -0.1 1,445,279 + ECD_01374 0.59 +0.5 1,445,279 + ECD_01374 0.59 +0.1 1,445,356 + ECD_01374 0.74 +3.5 1,445,356 + ECD_01374 0.74 +1.9 1,445,694 + +1.1 1,445,756 + -0.2 1,445,879 + ECD_01375 0.80 -0.1 1,445,879 + ECD_01375 0.80 +0.8 1,446,097 + -0.6 1,446,183 + +0.7 1,446,215 + +0.0
Or see this region's nucleotide sequence