Strain Fitness in Escherichia coli BL21 around ECD_01241

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01240 and ECD_01241 overlap by 4 nucleotidesECD_01241 and ECD_01243 are separated by 463 nucleotidesECD_01243 and ECD_01244 overlap by 82 nucleotides ECD_01240: ECD_01240 - PHP domain protein, at 1,308,812 to 1,309,693 _01240 ECD_01241: ECD_01241 - putative RNA binding protein, at 1,309,690 to 1,310,310 _01241 ECD_01243: ECD_01243 - IS1 protein InsA, at 1,310,774 to 1,311,049 _01243 ECD_01244: ECD_01244 - IS1 protein InsA, at 1,310,968 to 1,311,471 _01244 Position (kb) 1309 1310 1311Strain fitness (log2 ratio) -2 -1 0 1 2at 1308.752 kb on + strandat 1308.840 kb on - strandat 1309.084 kb on + strand, within ECD_01240at 1309.179 kb on + strand, within ECD_01240at 1309.179 kb on + strand, within ECD_01240at 1309.351 kb on - strand, within ECD_01240at 1309.980 kb on + strand, within ECD_01241at 1309.980 kb on + strand, within ECD_01241at 1310.250 kb on + strandat 1310.259 kb on + strandat 1310.532 kb on + strandat 1310.607 kb on + strandat 1310.607 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,308,752 + -2.4
1,308,840 - -1.3
1,309,084 + ECD_01240 0.31 -0.3
1,309,179 + ECD_01240 0.42 +1.0
1,309,179 + ECD_01240 0.42 +1.0
1,309,351 - ECD_01240 0.61 +2.0
1,309,980 + ECD_01241 0.47 -0.6
1,309,980 + ECD_01241 0.47 +1.5
1,310,250 + +0.1
1,310,259 + +0.5
1,310,532 + -0.8
1,310,607 + -0.6
1,310,607 + +1.0

Or see this region's nucleotide sequence