Strain Fitness in Escherichia coli BL21 around ECD_01120

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01118 and ECD_01119 are separated by 118 nucleotidesECD_01119 and ECD_01120 are separated by 49 nucleotidesECD_01120 and ECD_01121 are separated by 57 nucleotides ECD_01118: ECD_01118 - deacetylase of acs and cheY, chemotaxis regulator, at 1,182,890 to 1,183,729 _01118 ECD_01119: ECD_01119 - inner membrane protein, at 1,183,848 to 1,184,636 _01119 ECD_01120: ECD_01120 - DUF3592 family inner membrane protein, at 1,184,686 to 1,185,093 _01120 ECD_01121: ECD_01121 - spermidine/putrescine ABC transporter periplasmic binding protein, at 1,185,151 to 1,186,197 _01121 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -1 0 1 2 3at 1183.857 kb on - strandat 1185.461 kb on - strand, within ECD_01121at 1185.478 kb on - strand, within ECD_01121at 1185.546 kb on - strand, within ECD_01121at 1185.612 kb on - strand, within ECD_01121at 1185.811 kb on - strand, within ECD_01121at 1185.945 kb on - strand, within ECD_01121at 1185.945 kb on - strand, within ECD_01121at 1186.002 kb on - strand, within ECD_01121at 1186.002 kb on - strand, within ECD_01121at 1186.023 kb on - strand, within ECD_01121

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
remove
1,183,857 - -0.2
1,185,461 - ECD_01121 0.30 -1.0
1,185,478 - ECD_01121 0.31 -0.2
1,185,546 - ECD_01121 0.38 +0.9
1,185,612 - ECD_01121 0.44 -1.5
1,185,811 - ECD_01121 0.63 +1.1
1,185,945 - ECD_01121 0.76 +3.6
1,185,945 - ECD_01121 0.76 +0.4
1,186,002 - ECD_01121 0.81 +3.4
1,186,002 - ECD_01121 0.81 -0.3
1,186,023 - ECD_01121 0.83 +1.1

Or see this region's nucleotide sequence