Strain Fitness in Escherichia coli BL21 around ECD_01097

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01096 and ECD_01097 are separated by 294 nucleotidesECD_01097 and ECD_01098 are separated by 59 nucleotides ECD_01096: ECD_01096 - putative DNase, at 1,159,344 to 1,160,141 _01096 ECD_01097: ECD_01097 - fused glucose-specific PTS enzymes: IIB component/IIC component, at 1,160,436 to 1,161,869 _01097 ECD_01098: ECD_01098 - ferric-rhodotorulic acid outer membrane transporter, at 1,161,929 to 1,164,118 _01098 Position (kb) 1160 1161 1162Strain fitness (log2 ratio) -2 -1 0 1 2at 1159.486 kb on + strand, within ECD_01096at 1159.486 kb on + strand, within ECD_01096at 1159.486 kb on + strand, within ECD_01096at 1159.573 kb on + strand, within ECD_01096at 1159.644 kb on + strand, within ECD_01096at 1159.691 kb on + strand, within ECD_01096at 1160.032 kb on - strand, within ECD_01096at 1160.441 kb on + strandat 1160.801 kb on + strand, within ECD_01097at 1160.849 kb on + strand, within ECD_01097at 1160.849 kb on + strand, within ECD_01097at 1161.027 kb on + strand, within ECD_01097at 1161.155 kb on + strand, within ECD_01097at 1161.281 kb on + strand, within ECD_01097at 1161.438 kb on - strand, within ECD_01097at 1161.438 kb on - strand, within ECD_01097at 1161.537 kb on + strand, within ECD_01097at 1161.540 kb on + strand, within ECD_01097at 1161.699 kb on - strand, within ECD_01097at 1162.144 kb on - strandat 1162.405 kb on + strand, within ECD_01098at 1162.510 kb on - strand, within ECD_01098at 1162.584 kb on + strand, within ECD_01098at 1162.753 kb on - strand, within ECD_01098

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,159,486 + ECD_01096 0.18 -1.7
1,159,486 + ECD_01096 0.18 -0.9
1,159,486 + ECD_01096 0.18 -1.1
1,159,573 + ECD_01096 0.29 -1.5
1,159,644 + ECD_01096 0.38 +0.6
1,159,691 + ECD_01096 0.43 +0.5
1,160,032 - ECD_01096 0.86 +0.0
1,160,441 + -0.4
1,160,801 + ECD_01097 0.25 +1.7
1,160,849 + ECD_01097 0.29 +0.8
1,160,849 + ECD_01097 0.29 +0.7
1,161,027 + ECD_01097 0.41 +1.8
1,161,155 + ECD_01097 0.50 +0.1
1,161,281 + ECD_01097 0.59 +1.8
1,161,438 - ECD_01097 0.70 -0.6
1,161,438 - ECD_01097 0.70 +1.5
1,161,537 + ECD_01097 0.77 +1.1
1,161,540 + ECD_01097 0.77 +1.0
1,161,699 - ECD_01097 0.88 +1.0
1,162,144 - -0.6
1,162,405 + ECD_01098 0.22 -2.0
1,162,510 - ECD_01098 0.27 -0.6
1,162,584 + ECD_01098 0.30 -1.4
1,162,753 - ECD_01098 0.38 +1.6

Or see this region's nucleotide sequence