Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00929 and ECD_00930 are separated by 180 nucleotides ECD_00930 and ECD_00931 are separated by 26 nucleotides ECD_00931 and ECD_00932 are separated by 221 nucleotides
ECD_00929: ECD_00929 - murein L,D-transpeptidase, at 986,137 to 987,984
_00929
ECD_00930: ECD_00930 - M15A protease-related family periplasmic protein, at 988,165 to 988,713
_00930
ECD_00931: ECD_00931 - putative metal-binding enzyme, at 988,740 to 989,387
_00931
ECD_00932: ECD_00932 - aspartate aminotransferase, PLP-dependent, at 989,609 to 990,799
_00932
Position (kb) 988
989
990 Strain fitness (log2 ratio) -1
0
1
2 at 987.823 kb on + strand at 987.922 kb on + strand at 987.922 kb on + strand at 987.922 kb on + strand at 987.991 kb on + strand at 988.017 kb on + strand at 988.151 kb on + strand at 988.347 kb on + strand, within ECD_00930 at 988.460 kb on + strand, within ECD_00930 at 988.657 kb on + strand, within ECD_00930 at 988.683 kb on + strand at 988.751 kb on + strand at 988.789 kb on + strand at 989.024 kb on + strand, within ECD_00931 at 989.119 kb on + strand, within ECD_00931 at 989.119 kb on + strand, within ECD_00931 at 989.212 kb on + strand, within ECD_00931 at 989.270 kb on + strand, within ECD_00931 at 989.299 kb on + strand, within ECD_00931 at 989.351 kb on + strand at 989.840 kb on - strand, within ECD_00932
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 987,823 + -0.0 987,922 + +0.0 987,922 + +0.5 987,922 + -1.6 987,991 + +0.6 988,017 + -0.2 988,151 + -0.5 988,347 + ECD_00930 0.33 -1.4 988,460 + ECD_00930 0.54 -0.3 988,657 + ECD_00930 0.90 +0.4 988,683 + +2.5 988,751 + +0.6 988,789 + +0.7 989,024 + ECD_00931 0.44 +0.2 989,119 + ECD_00931 0.58 +1.5 989,119 + ECD_00931 0.58 +0.2 989,212 + ECD_00931 0.73 -1.3 989,270 + ECD_00931 0.82 -0.9 989,299 + ECD_00931 0.86 -1.0 989,351 + -0.4 989,840 - ECD_00932 0.19 +1.2
Or see this region's nucleotide sequence