Strain Fitness in Escherichia coli BL21 around ECD_00920

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00919 and ECD_00920 are separated by 36 nucleotidesECD_00920 and ECD_00921 are separated by 51 nucleotidesECD_00921 and ECD_00922 overlap by 4 nucleotides ECD_00919: ECD_00919 - lipid A 4'kinase, at 973,456 to 974,442 _00919 ECD_00920: ECD_00920 - DUF1006 family protein with C-terminal wHTH domain, at 974,479 to 975,711 _00920 ECD_00921: ECD_00921 - peroxide and acid resistance protein, UPF0434 family, at 975,763 to 975,945 _00921 ECD_00922: ECD_00922 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 975,942 to 976,688 _00922 Position (kb) 974 975 976Strain fitness (log2 ratio) -2 -1 0 1at 974.417 kb on + strandat 974.440 kb on + strandat 974.440 kb on + strandat 974.728 kb on + strand, within ECD_00920at 974.818 kb on + strand, within ECD_00920at 974.982 kb on + strand, within ECD_00920at 975.400 kb on - strand, within ECD_00920at 975.418 kb on + strand, within ECD_00920at 975.467 kb on + strand, within ECD_00920at 975.561 kb on + strand, within ECD_00920at 975.670 kb on - strandat 975.718 kb on - strandat 975.729 kb on + strandat 975.729 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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974,417 + +1.2
974,440 + -1.1
974,440 + -0.3
974,728 + ECD_00920 0.20 -1.1
974,818 + ECD_00920 0.27 -1.3
974,982 + ECD_00920 0.41 -0.6
975,400 - ECD_00920 0.75 -1.4
975,418 + ECD_00920 0.76 -1.8
975,467 + ECD_00920 0.80 +0.6
975,561 + ECD_00920 0.88 -1.1
975,670 - +0.4
975,718 - +1.5
975,729 + +0.4
975,729 + +0.2

Or see this region's nucleotide sequence