Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00866 and ECD_00867 overlap by 1 nucleotides ECD_00867 and ECD_00868 are separated by 6 nucleotides ECD_00868 and ECD_00869 are separated by 17 nucleotides ECD_00869 and ECD_00870 are separated by 217 nucleotides
ECD_00866: ECD_00866 - arginine ABC transporter permease, at 905,570 to 906,238
_00866
ECD_00867: ECD_00867 - arginine ABC transporter permease, at 906,238 to 906,954
_00867
ECD_00868: ECD_00868 - arginine transporter subunit, at 906,961 to 907,692
_00868
ECD_00869: ECD_00869 - arginine ABC transporter ATPase, at 907,710 to 908,438
_00869
ECD_00870: ECD_00870 - lipoprotein, at 908,656 to 909,171
_00870
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1 at 906.086 kb on - strand, within ECD_00866 at 906.229 kb on - strand at 906.321 kb on - strand, within ECD_00867 at 906.349 kb on - strand, within ECD_00867 at 906.395 kb on - strand, within ECD_00867 at 906.935 kb on - strand at 907.227 kb on - strand, within ECD_00868 at 907.270 kb on - strand, within ECD_00868 at 907.341 kb on - strand, within ECD_00868 at 907.382 kb on + strand, within ECD_00868 at 907.451 kb on - strand, within ECD_00868 at 907.654 kb on - strand at 907.780 kb on - strand at 907.802 kb on - strand, within ECD_00869 at 907.802 kb on - strand, within ECD_00869 at 907.863 kb on - strand, within ECD_00869 at 908.037 kb on - strand, within ECD_00869 at 908.168 kb on - strand, within ECD_00869 at 908.168 kb on - strand, within ECD_00869 at 908.168 kb on - strand, within ECD_00869 at 908.341 kb on - strand, within ECD_00869 at 908.341 kb on - strand, within ECD_00869 at 908.449 kb on - strand at 908.449 kb on - strand at 908.469 kb on - strand at 908.469 kb on - strand at 908.469 kb on - strand at 908.469 kb on - strand at 908.593 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 906,086 - ECD_00866 0.77 -1.2 906,229 - -1.0 906,321 - ECD_00867 0.12 -1.5 906,349 - ECD_00867 0.15 -0.7 906,395 - ECD_00867 0.22 -1.9 906,935 - +0.9 907,227 - ECD_00868 0.36 -0.2 907,270 - ECD_00868 0.42 -0.3 907,341 - ECD_00868 0.52 +0.1 907,382 + ECD_00868 0.58 +1.4 907,451 - ECD_00868 0.67 +1.0 907,654 - -1.0 907,780 - -1.3 907,802 - ECD_00869 0.13 -0.7 907,802 - ECD_00869 0.13 -1.2 907,863 - ECD_00869 0.21 +1.1 908,037 - ECD_00869 0.45 +0.3 908,168 - ECD_00869 0.63 +0.6 908,168 - ECD_00869 0.63 +0.7 908,168 - ECD_00869 0.63 -1.2 908,341 - ECD_00869 0.87 -0.9 908,341 - ECD_00869 0.87 -1.6 908,449 - +0.7 908,449 - +0.2 908,469 - -1.0 908,469 - +0.6 908,469 - +0.5 908,469 - -0.4 908,593 + +0.2
Or see this region's nucleotide sequence