Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00775 and ECD_00776 are separated by 260 nucleotides ECD_00776 and ECD_00777 overlap by 4 nucleotides ECD_00777 and ECD_00778 are separated by 138 nucleotides
ECD_00775: ECD_00775 - mechanosensitive channel protein, intermediate conductance, at 827,247 to 829,472
_00775
ECD_00776: ECD_00776 - glutamine transporter subunit, at 829,733 to 830,455
_00776
ECD_00777: ECD_00777 - glutamine transporter subunit, at 830,452 to 831,111
_00777
ECD_00778: ECD_00778 - glutamine transporter subunit, at 831,250 to 831,996
_00778
Position (kb) 830
831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 829.510 kb on - strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.511 kb on + strand at 829.512 kb on - strand at 829.588 kb on - strand at 829.731 kb on + strand at 830.512 kb on - strand at 830.520 kb on - strand, within ECD_00777 at 830.520 kb on - strand, within ECD_00777 at 830.673 kb on + strand, within ECD_00777 at 830.674 kb on - strand, within ECD_00777 at 830.674 kb on - strand, within ECD_00777 at 830.703 kb on - strand, within ECD_00777 at 830.766 kb on + strand, within ECD_00777 at 830.802 kb on - strand, within ECD_00777 at 830.802 kb on - strand, within ECD_00777 at 830.842 kb on - strand, within ECD_00777 at 830.858 kb on - strand, within ECD_00777 at 831.111 kb on + strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.158 kb on + strand at 831.243 kb on - strand at 831.252 kb on - strand at 831.373 kb on - strand, within ECD_00778 at 831.378 kb on - strand, within ECD_00778 at 831.504 kb on - strand, within ECD_00778 at 831.563 kb on + strand, within ECD_00778 at 831.678 kb on - strand, within ECD_00778 at 831.706 kb on - strand, within ECD_00778 at 831.860 kb on + strand, within ECD_00778 at 831.860 kb on + strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 829,510 - -2.5 829,511 + +0.5 829,511 + -0.5 829,511 + +0.8 829,511 + -0.9 829,511 + +0.0 829,511 + -0.5 829,512 - -2.6 829,588 - -1.4 829,731 + -1.0 830,512 - +0.5 830,520 - ECD_00777 0.10 -0.7 830,520 - ECD_00777 0.10 +0.3 830,673 + ECD_00777 0.33 +0.1 830,674 - ECD_00777 0.34 +0.1 830,674 - ECD_00777 0.34 +0.3 830,703 - ECD_00777 0.38 -0.8 830,766 + ECD_00777 0.48 -0.2 830,802 - ECD_00777 0.53 +0.5 830,802 - ECD_00777 0.53 -0.5 830,842 - ECD_00777 0.59 -0.7 830,858 - ECD_00777 0.62 +0.8 831,111 + -2.2 831,112 - +2.2 831,112 - +0.2 831,112 - +1.3 831,112 - +1.4 831,112 - +0.2 831,112 - +0.6 831,158 + -0.8 831,243 - +0.2 831,252 - -0.2 831,373 - ECD_00778 0.16 -0.5 831,378 - ECD_00778 0.17 +0.1 831,504 - ECD_00778 0.34 -0.9 831,563 + ECD_00778 0.42 -1.2 831,678 - ECD_00778 0.57 +1.7 831,706 - ECD_00778 0.61 -1.2 831,860 + ECD_00778 0.82 -2.8 831,860 + ECD_00778 0.82 +0.1 831,861 - ECD_00778 0.82 -0.7 831,861 - ECD_00778 0.82 -0.8 831,861 - ECD_00778 0.82 -0.7 831,861 - ECD_00778 0.82 -2.0
Or see this region's nucleotide sequence