Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00756 and ECD_00757 overlap by 4 nucleotides ECD_00757 and ECD_00758 are separated by 132 nucleotides ECD_00758 and ECD_00759 overlap by 39 nucleotides
ECD_00756: ECD_00756 - cardiolipin synthase 2, at 806,490 to 807,731
_00756
ECD_00757: ECD_00757 - endo/exonuclease/phosphatase family protein, at 807,728 to 808,489
_00757
ECD_00758: ECD_00758 - inner membrane protein, at 808,622 to 809,032
_00758
ECD_00759: ECD_00759 - putative ABC transporter permease, at 808,994 to 810,100
_00759
Position (kb) 808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 807.670 kb on + strand at 807.673 kb on + strand at 807.674 kb on - strand at 807.722 kb on + strand at 807.723 kb on - strand at 807.828 kb on + strand, within ECD_00757 at 807.829 kb on - strand, within ECD_00757 at 807.829 kb on - strand, within ECD_00757 at 807.845 kb on + strand, within ECD_00757 at 808.068 kb on - strand, within ECD_00757 at 808.171 kb on - strand, within ECD_00757 at 808.224 kb on + strand, within ECD_00757 at 808.226 kb on + strand, within ECD_00757 at 808.227 kb on - strand, within ECD_00757 at 808.282 kb on - strand, within ECD_00757 at 808.490 kb on - strand at 808.692 kb on + strand, within ECD_00758 at 808.763 kb on + strand, within ECD_00758 at 808.995 kb on + strand at 809.006 kb on - strand at 809.071 kb on + strand at 809.071 kb on + strand at 809.072 kb on - strand at 809.227 kb on + strand, within ECD_00759 at 809.227 kb on + strand, within ECD_00759 at 809.228 kb on - strand, within ECD_00759 at 809.307 kb on - strand, within ECD_00759 at 809.590 kb on - strand, within ECD_00759 at 809.606 kb on - strand, within ECD_00759 at 809.608 kb on - strand, within ECD_00759 at 809.697 kb on + strand, within ECD_00759 at 809.728 kb on + strand, within ECD_00759 at 809.908 kb on + strand, within ECD_00759 at 809.909 kb on - strand, within ECD_00759 at 809.932 kb on + strand, within ECD_00759 at 809.944 kb on - strand, within ECD_00759
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 807,670 + -3.4 807,673 + -0.7 807,674 - +0.7 807,722 + -1.7 807,723 - -0.6 807,828 + ECD_00757 0.13 -0.6 807,829 - ECD_00757 0.13 -1.4 807,829 - ECD_00757 0.13 -0.7 807,845 + ECD_00757 0.15 +0.2 808,068 - ECD_00757 0.45 -0.8 808,171 - ECD_00757 0.58 +0.8 808,224 + ECD_00757 0.65 -2.4 808,226 + ECD_00757 0.65 -2.2 808,227 - ECD_00757 0.65 +0.4 808,282 - ECD_00757 0.73 -1.5 808,490 - +0.4 808,692 + ECD_00758 0.17 +0.3 808,763 + ECD_00758 0.34 -0.6 808,995 + -0.0 809,006 - +0.0 809,071 + -0.6 809,071 + -2.8 809,072 - -1.3 809,227 + ECD_00759 0.21 -0.4 809,227 + ECD_00759 0.21 -1.5 809,228 - ECD_00759 0.21 +0.5 809,307 - ECD_00759 0.28 -1.3 809,590 - ECD_00759 0.54 -0.7 809,606 - ECD_00759 0.55 -1.3 809,608 - ECD_00759 0.55 -0.8 809,697 + ECD_00759 0.64 -1.2 809,728 + ECD_00759 0.66 -2.5 809,908 + ECD_00759 0.83 -0.8 809,909 - ECD_00759 0.83 -1.9 809,932 + ECD_00759 0.85 -2.2 809,944 - ECD_00759 0.86 -2.2
Or see this region's nucleotide sequence