Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00740 and ECD_00741 are separated by 58 nucleotides ECD_00741 and ECD_00742 are separated by 86 nucleotides
ECD_00740: ECD_00740 - kinase inhibitor-like protein, UPF0098 family, at 791,426 to 791,902
_00740
ECD_00741: ECD_00741 - 7,8-diaminopelargonic acid synthase, PLP-dependent, at 791,961 to 793,250
_00741
ECD_00742: ECD_00742 - biotin synthase, at 793,337 to 794,377
_00742
Position (kb) 791
792
793
794 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 791.230 kb on - strand at 791.521 kb on + strand, within ECD_00740 at 791.522 kb on - strand, within ECD_00740 at 791.528 kb on + strand, within ECD_00740 at 791.528 kb on + strand, within ECD_00740 at 791.530 kb on + strand, within ECD_00740 at 791.531 kb on - strand, within ECD_00740 at 792.039 kb on - strand at 792.042 kb on - strand at 792.059 kb on - strand at 792.229 kb on - strand, within ECD_00741 at 792.320 kb on + strand, within ECD_00741 at 792.321 kb on - strand, within ECD_00741 at 792.339 kb on - strand, within ECD_00741 at 792.492 kb on - strand, within ECD_00741 at 792.584 kb on - strand, within ECD_00741 at 792.584 kb on - strand, within ECD_00741 at 792.809 kb on + strand, within ECD_00741 at 793.058 kb on + strand, within ECD_00741 at 793.106 kb on + strand, within ECD_00741 at 793.107 kb on - strand, within ECD_00741 at 793.107 kb on - strand, within ECD_00741 at 793.107 kb on - strand, within ECD_00741 at 793.201 kb on + strand at 793.214 kb on + strand at 793.251 kb on - strand at 793.720 kb on + strand, within ECD_00742 at 793.784 kb on + strand, within ECD_00742 at 793.785 kb on - strand, within ECD_00742 at 793.920 kb on + strand, within ECD_00742 at 794.108 kb on + strand, within ECD_00742 at 794.109 kb on - strand, within ECD_00742 at 794.167 kb on + strand, within ECD_00742 at 794.234 kb on - strand, within ECD_00742
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 791,230 - -0.2 791,521 + ECD_00740 0.20 +0.4 791,522 - ECD_00740 0.20 +0.0 791,528 + ECD_00740 0.21 +1.3 791,528 + ECD_00740 0.21 -1.0 791,530 + ECD_00740 0.22 -0.0 791,531 - ECD_00740 0.22 -0.2 792,039 - +3.5 792,042 - +0.2 792,059 - -1.0 792,229 - ECD_00741 0.21 -0.5 792,320 + ECD_00741 0.28 -0.8 792,321 - ECD_00741 0.28 -0.4 792,339 - ECD_00741 0.29 -0.7 792,492 - ECD_00741 0.41 -0.4 792,584 - ECD_00741 0.48 -0.8 792,584 - ECD_00741 0.48 -0.5 792,809 + ECD_00741 0.66 -0.5 793,058 + ECD_00741 0.85 +0.8 793,106 + ECD_00741 0.89 -1.3 793,107 - ECD_00741 0.89 +1.4 793,107 - ECD_00741 0.89 -0.2 793,107 - ECD_00741 0.89 +0.3 793,201 + -1.4 793,214 + +0.7 793,251 - -0.9 793,720 + ECD_00742 0.37 -1.8 793,784 + ECD_00742 0.43 +2.0 793,785 - ECD_00742 0.43 -0.7 793,920 + ECD_00742 0.56 +0.1 794,108 + ECD_00742 0.74 -0.3 794,109 - ECD_00742 0.74 -0.4 794,167 + ECD_00742 0.80 -0.6 794,234 - ECD_00742 0.86 -1.3
Or see this region's nucleotide sequence