Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00539 and ECD_00540 are separated by 93 nucleotides ECD_00540 and ECD_00541 are separated by 64 nucleotides ECD_00541 and ECD_00542 are separated by 65 nucleotides ECD_00542 and ECD_00543 are separated by 268 nucleotides
ECD_00539: ECD_00539 - dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive, at 563,440 to 564,093
_00539
ECD_00540: ECD_00540 - DUF419 family protein, at 564,187 to 564,555
_00540
ECD_00541: ECD_00541 - DUF1158 family putative inner membrane protein, at 564,620 to 564,868
_00541
ECD_00542: ECD_00542 - weak gamma-glutamyl:cysteine ligase, at 564,934 to 566,052
_00542
ECD_00543: ECD_00543 - IS150 hypothetical protein, at 566,321 to 566,842
_00543
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -2
-1
0
1 at 563.949 kb on + strand, within ECD_00539 at 563.988 kb on - strand, within ECD_00539 at 564.156 kb on - strand at 564.176 kb on - strand at 564.176 kb on - strand at 564.356 kb on - strand, within ECD_00540 at 564.436 kb on - strand, within ECD_00540 at 564.590 kb on + strand at 564.590 kb on + strand at 564.591 kb on - strand at 564.670 kb on - strand, within ECD_00541 at 564.868 kb on + strand at 564.884 kb on - strand at 564.935 kb on + strand at 565.432 kb on + strand, within ECD_00542 at 565.456 kb on - strand, within ECD_00542 at 565.542 kb on + strand, within ECD_00542 at 565.542 kb on + strand, within ECD_00542 at 565.542 kb on + strand, within ECD_00542 at 565.542 kb on + strand, within ECD_00542 at 565.543 kb on - strand, within ECD_00542 at 565.544 kb on + strand, within ECD_00542 at 565.545 kb on - strand, within ECD_00542 at 565.545 kb on - strand, within ECD_00542 at 565.607 kb on + strand, within ECD_00542 at 565.608 kb on - strand, within ECD_00542 at 565.723 kb on + strand, within ECD_00542 at 565.805 kb on - strand, within ECD_00542 at 565.963 kb on + strand at 566.085 kb on + strand at 566.086 kb on - strand at 566.087 kb on + strand at 566.179 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 563,949 + ECD_00539 0.78 -2.0 563,988 - ECD_00539 0.84 -0.1 564,156 - +0.3 564,176 - +0.4 564,176 - -1.0 564,356 - ECD_00540 0.46 -0.5 564,436 - ECD_00540 0.67 -1.9 564,590 + -1.3 564,590 + -1.1 564,591 - -1.8 564,670 - ECD_00541 0.20 -1.8 564,868 + -1.6 564,884 - +0.1 564,935 + -0.0 565,432 + ECD_00542 0.45 +1.3 565,456 - ECD_00542 0.47 -1.5 565,542 + ECD_00542 0.54 +0.4 565,542 + ECD_00542 0.54 -0.5 565,542 + ECD_00542 0.54 -0.7 565,542 + ECD_00542 0.54 -0.2 565,543 - ECD_00542 0.54 -0.9 565,544 + ECD_00542 0.55 -0.6 565,545 - ECD_00542 0.55 -2.3 565,545 - ECD_00542 0.55 -1.8 565,607 + ECD_00542 0.60 -0.3 565,608 - ECD_00542 0.60 -2.2 565,723 + ECD_00542 0.71 -1.3 565,805 - ECD_00542 0.78 -2.3 565,963 + +0.5 566,085 + -0.1 566,086 - +0.1 566,087 + -0.1 566,179 + -0.8
Or see this region's nucleotide sequence