Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00533 and ECD_00534 are separated by 157 nucleotides ECD_00534 and ECD_00535 are separated by 15 nucleotides ECD_00535 and ECD_00536 are separated by 11 nucleotides
ECD_00533: ECD_00533 - copper/silver efflux system, outer membrane component, at 554,282 to 555,655
_00533
ECD_00534: ECD_00534 - periplasmic copper- and silver-binding protein, at 555,813 to 556,145
_00534
ECD_00535: ECD_00535 - copper/silver efflux system, membrane fusion protein, at 556,161 to 557,384
_00535
ECD_00536: ECD_00536 - copper/silver efflux system, membrane component, at 557,396 to 560,539
_00536
Position (kb) 556
557
558 Strain fitness (log2 ratio) -2
-1
0
1 at 555.516 kb on - strand, within ECD_00533 at 556.127 kb on + strand at 556.281 kb on - strand at 556.281 kb on - strand at 556.349 kb on + strand, within ECD_00535 at 556.349 kb on + strand, within ECD_00535 at 556.507 kb on - strand, within ECD_00535 at 556.567 kb on - strand, within ECD_00535 at 556.880 kb on + strand, within ECD_00535 at 557.370 kb on - strand at 557.669 kb on + strand at 557.669 kb on + strand at 557.675 kb on + strand at 557.675 kb on + strand at 557.675 kb on + strand at 557.676 kb on - strand at 557.753 kb on - strand, within ECD_00536 at 557.813 kb on + strand, within ECD_00536 at 557.814 kb on - strand, within ECD_00536 at 557.814 kb on - strand, within ECD_00536 at 557.842 kb on + strand, within ECD_00536 at 557.862 kb on + strand, within ECD_00536 at 557.871 kb on + strand, within ECD_00536 at 557.892 kb on - strand, within ECD_00536 at 557.892 kb on - strand, within ECD_00536 at 557.892 kb on - strand, within ECD_00536 at 557.991 kb on - strand, within ECD_00536 at 558.228 kb on + strand, within ECD_00536 at 558.362 kb on - strand, within ECD_00536 at 558.368 kb on + strand, within ECD_00536
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 555,516 - ECD_00533 0.90 -2.5 556,127 + -0.4 556,281 - -0.8 556,281 - -0.6 556,349 + ECD_00535 0.15 -0.1 556,349 + ECD_00535 0.15 +1.1 556,507 - ECD_00535 0.28 -1.2 556,567 - ECD_00535 0.33 -2.2 556,880 + ECD_00535 0.59 +1.0 557,370 - -2.0 557,669 + -1.2 557,669 + -0.0 557,675 + +0.4 557,675 + -1.1 557,675 + -0.6 557,676 - -0.5 557,753 - ECD_00536 0.11 -0.2 557,813 + ECD_00536 0.13 -0.8 557,814 - ECD_00536 0.13 +1.1 557,814 - ECD_00536 0.13 -1.0 557,842 + ECD_00536 0.14 +0.1 557,862 + ECD_00536 0.15 +0.9 557,871 + ECD_00536 0.15 +0.1 557,892 - ECD_00536 0.16 -1.8 557,892 - ECD_00536 0.16 +0.3 557,892 - ECD_00536 0.16 -2.1 557,991 - ECD_00536 0.19 -1.1 558,228 + ECD_00536 0.26 +0.4 558,362 - ECD_00536 0.31 +0.7 558,368 + ECD_00536 0.31 -0.7
Or see this region's nucleotide sequence