Strain Fitness in Escherichia coli BL21 around ECD_00456

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00454 and ECD_00455 are separated by 229 nucleotidesECD_00455 and ECD_00456 are separated by 77 nucleotidesECD_00456 and ECD_00457 are separated by 89 nucleotides ECD_00454: ECD_00454 - allD operon transcriptional activator, at 500,440 to 501,366 _00454 ECD_00455: ECD_00455 - ureidoglycolate lyase, releasing urea, at 501,596 to 502,078 _00455 ECD_00456: ECD_00456 - glyoxylate-inducible transcriptional repressor of all and gcl operons, at 502,156 to 502,971 _00456 ECD_00457: ECD_00457 - glyoxylate carboligase, at 503,061 to 504,842 _00457 Position (kb) 502 503Strain fitness (log2 ratio) -2 -1 0 1at 501.173 kb on - strand, within ECD_00454at 501.290 kb on - strandat 501.576 kb on + strandat 501.582 kb on - strandat 501.582 kb on - strandat 501.609 kb on + strandat 501.634 kb on + strandat 501.947 kb on + strand, within ECD_00455at 501.955 kb on + strand, within ECD_00455at 502.049 kb on - strandat 502.099 kb on - strandat 502.108 kb on + strandat 502.109 kb on - strandat 502.123 kb on + strandat 502.151 kb on + strandat 502.151 kb on + strandat 502.152 kb on - strandat 502.155 kb on + strandat 502.252 kb on + strand, within ECD_00456at 502.395 kb on + strand, within ECD_00456at 502.395 kb on + strand, within ECD_00456at 502.397 kb on + strand, within ECD_00456at 502.397 kb on + strand, within ECD_00456at 502.397 kb on + strand, within ECD_00456at 502.397 kb on + strand, within ECD_00456at 502.403 kb on + strand, within ECD_00456at 502.403 kb on + strand, within ECD_00456at 502.403 kb on + strand, within ECD_00456at 502.403 kb on + strand, within ECD_00456at 502.403 kb on + strand, within ECD_00456at 502.403 kb on + strand, within ECD_00456at 502.403 kb on + strand, within ECD_00456at 502.403 kb on + strand, within ECD_00456at 502.429 kb on + strand, within ECD_00456at 502.429 kb on + strand, within ECD_00456at 502.430 kb on - strand, within ECD_00456at 502.487 kb on + strand, within ECD_00456at 502.538 kb on + strand, within ECD_00456at 502.541 kb on + strand, within ECD_00456at 502.541 kb on + strand, within ECD_00456at 502.553 kb on + strand, within ECD_00456at 502.560 kb on + strand, within ECD_00456at 502.560 kb on + strand, within ECD_00456at 502.707 kb on + strand, within ECD_00456at 502.707 kb on + strand, within ECD_00456at 502.708 kb on - strand, within ECD_00456at 502.719 kb on + strand, within ECD_00456at 502.765 kb on + strand, within ECD_00456at 502.776 kb on + strand, within ECD_00456at 502.822 kb on + strand, within ECD_00456at 502.822 kb on + strand, within ECD_00456at 502.970 kb on - strandat 503.094 kb on + strandat 503.094 kb on + strandat 503.094 kb on + strandat 503.094 kb on + strandat 503.114 kb on + strandat 503.161 kb on - strandat 503.242 kb on - strand, within ECD_00457at 503.243 kb on + strand, within ECD_00457at 503.273 kb on - strand, within ECD_00457at 503.273 kb on - strand, within ECD_00457at 503.410 kb on + strand, within ECD_00457at 503.410 kb on + strand, within ECD_00457at 503.592 kb on + strand, within ECD_00457at 503.593 kb on - strand, within ECD_00457at 503.593 kb on - strand, within ECD_00457at 503.593 kb on - strand, within ECD_00457at 503.659 kb on + strand, within ECD_00457at 503.701 kb on + strand, within ECD_00457at 503.705 kb on + strand, within ECD_00457at 503.960 kb on + strand, within ECD_00457at 503.960 kb on + strand, within ECD_00457at 503.961 kb on - strand, within ECD_00457

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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501,173 - ECD_00454 0.79 +0.1
501,290 - -0.3
501,576 + +0.0
501,582 - +0.9
501,582 - -0.5
501,609 + -0.2
501,634 + -0.7
501,947 + ECD_00455 0.73 -1.6
501,955 + ECD_00455 0.74 -0.1
502,049 - -0.2
502,099 - -1.1
502,108 + +0.0
502,109 - -1.7
502,123 + +0.2
502,151 + +1.0
502,151 + +1.1
502,152 - -1.6
502,155 + +1.1
502,252 + ECD_00456 0.12 -1.0
502,395 + ECD_00456 0.29 +0.8
502,395 + ECD_00456 0.29 +1.1
502,397 + ECD_00456 0.30 +0.9
502,397 + ECD_00456 0.30 +0.5
502,397 + ECD_00456 0.30 +0.6
502,397 + ECD_00456 0.30 +0.8
502,403 + ECD_00456 0.30 +0.2
502,403 + ECD_00456 0.30 +1.1
502,403 + ECD_00456 0.30 +0.7
502,403 + ECD_00456 0.30 +1.0
502,403 + ECD_00456 0.30 +0.3
502,403 + ECD_00456 0.30 +0.5
502,403 + ECD_00456 0.30 +0.7
502,403 + ECD_00456 0.30 +0.4
502,429 + ECD_00456 0.33 +0.6
502,429 + ECD_00456 0.33 +0.1
502,430 - ECD_00456 0.34 -1.3
502,487 + ECD_00456 0.41 -0.7
502,538 + ECD_00456 0.47 -0.6
502,541 + ECD_00456 0.47 +0.1
502,541 + ECD_00456 0.47 +0.6
502,553 + ECD_00456 0.49 +0.4
502,560 + ECD_00456 0.50 -0.2
502,560 + ECD_00456 0.50 +0.9
502,707 + ECD_00456 0.68 +1.0
502,707 + ECD_00456 0.68 +0.9
502,708 - ECD_00456 0.68 -1.6
502,719 + ECD_00456 0.69 +0.7
502,765 + ECD_00456 0.75 +0.8
502,776 + ECD_00456 0.76 +0.6
502,822 + ECD_00456 0.82 +1.1
502,822 + ECD_00456 0.82 +0.7
502,970 - -0.7
503,094 + -0.7
503,094 + -0.1
503,094 + +0.6
503,094 + -0.7
503,114 + -1.6
503,161 - -1.2
503,242 - ECD_00457 0.10 -2.7
503,243 + ECD_00457 0.10 -0.4
503,273 - ECD_00457 0.12 -1.0
503,273 - ECD_00457 0.12 -0.6
503,410 + ECD_00457 0.20 -0.5
503,410 + ECD_00457 0.20 +0.5
503,592 + ECD_00457 0.30 -0.0
503,593 - ECD_00457 0.30 -1.2
503,593 - ECD_00457 0.30 -1.4
503,593 - ECD_00457 0.30 -0.9
503,659 + ECD_00457 0.34 -0.2
503,701 + ECD_00457 0.36 +0.4
503,705 + ECD_00457 0.36 -0.5
503,960 + ECD_00457 0.50 -1.0
503,960 + ECD_00457 0.50 +0.7
503,961 - ECD_00457 0.51 -0.9

Or see this region's nucleotide sequence