Strain Fitness in Escherichia coli BL21 around ECD_00416

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00414 and ECD_00415 are separated by 141 nucleotidesECD_00415 and ECD_00416 are separated by 127 nucleotidesECD_00416 and ECD_00417 are separated by 211 nucleotidesECD_00417 and ECD_00418 are separated by 13 nucleotidesECD_00418 and ECD_00419 are separated by 69 nucleotides ECD_00414: ECD_00414 - multidrug efflux system, at 453,472 to 454,665 _00414 ECD_00415: ECD_00415 - transcriptional repressor, at 454,807 to 455,454 _00415 ECD_00416: ECD_00416 - mechanosensitive channel protein, intermediate conductance, K+ regulated, at 455,582 to 458,944 _00416 ECD_00417: ECD_00417 - DUF2496 family protein, at 459,156 to 459,317 _00417 ECD_00418: ECD_00418 - primosomal replication protein N'', at 459,331 to 459,858 _00418 ECD_00419: ECD_00419 - DUF454 family inner membrane protein, at 459,928 to 460,305 _00419 Position (kb) 455 456 457 458 459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 454.669 kb on + strandat 454.670 kb on - strandat 454.670 kb on - strandat 454.670 kb on - strandat 454.713 kb on + strandat 454.714 kb on - strandat 454.734 kb on + strandat 454.735 kb on - strandat 454.735 kb on - strandat 454.736 kb on + strandat 454.737 kb on - strandat 454.759 kb on + strandat 454.759 kb on + strandat 454.792 kb on + strandat 454.806 kb on + strandat 454.807 kb on - strandat 455.024 kb on + strand, within ECD_00415at 455.081 kb on + strand, within ECD_00415at 455.084 kb on + strand, within ECD_00415at 455.084 kb on + strand, within ECD_00415at 455.142 kb on + strand, within ECD_00415at 455.142 kb on + strand, within ECD_00415at 455.142 kb on + strand, within ECD_00415at 455.199 kb on + strand, within ECD_00415at 455.200 kb on - strand, within ECD_00415at 455.250 kb on + strand, within ECD_00415at 455.316 kb on + strand, within ECD_00415at 455.410 kb on + strandat 455.411 kb on - strandat 455.588 kb on - strandat 455.588 kb on - strandat 455.600 kb on + strandat 455.635 kb on + strandat 455.800 kb on + strandat 455.800 kb on + strandat 455.800 kb on + strandat 455.800 kb on + strandat 455.801 kb on - strandat 455.801 kb on - strandat 455.917 kb on + strandat 455.917 kb on + strandat 455.917 kb on + strandat 455.918 kb on - strandat 456.041 kb on + strand, within ECD_00416at 456.042 kb on - strand, within ECD_00416at 456.043 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.099 kb on - strand, within ECD_00416at 456.099 kb on - strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.169 kb on - strand, within ECD_00416at 456.169 kb on - strand, within ECD_00416at 456.169 kb on - strand, within ECD_00416at 456.271 kb on + strand, within ECD_00416at 456.272 kb on - strand, within ECD_00416at 456.293 kb on + strand, within ECD_00416at 456.294 kb on - strand, within ECD_00416at 456.330 kb on + strand, within ECD_00416at 456.331 kb on - strand, within ECD_00416at 456.471 kb on + strand, within ECD_00416at 456.622 kb on + strand, within ECD_00416at 456.622 kb on + strand, within ECD_00416at 456.623 kb on - strand, within ECD_00416at 456.630 kb on - strand, within ECD_00416at 456.921 kb on + strand, within ECD_00416at 457.683 kb on + strand, within ECD_00416at 457.714 kb on + strand, within ECD_00416at 457.721 kb on + strand, within ECD_00416at 457.727 kb on + strand, within ECD_00416at 457.727 kb on + strand, within ECD_00416at 457.728 kb on - strand, within ECD_00416at 457.728 kb on - strand, within ECD_00416at 457.806 kb on + strand, within ECD_00416at 457.818 kb on + strand, within ECD_00416at 457.939 kb on + strand, within ECD_00416at 457.940 kb on - strand, within ECD_00416at 458.229 kb on - strand, within ECD_00416at 458.236 kb on + strand, within ECD_00416at 458.237 kb on - strand, within ECD_00416at 458.237 kb on - strand, within ECD_00416at 458.237 kb on - strand, within ECD_00416at 458.239 kb on + strand, within ECD_00416at 458.239 kb on + strand, within ECD_00416at 458.239 kb on + strand, within ECD_00416at 458.248 kb on + strand, within ECD_00416at 458.248 kb on + strand, within ECD_00416at 458.252 kb on + strand, within ECD_00416at 458.252 kb on + strand, within ECD_00416at 458.260 kb on + strand, within ECD_00416at 458.344 kb on - strand, within ECD_00416at 458.446 kb on + strand, within ECD_00416at 458.463 kb on + strand, within ECD_00416at 458.463 kb on + strand, within ECD_00416at 458.467 kb on + strand, within ECD_00416at 458.468 kb on - strand, within ECD_00416at 458.468 kb on - strand, within ECD_00416at 458.468 kb on - strand, within ECD_00416at 458.578 kb on + strand, within ECD_00416at 458.750 kb on + strandat 458.750 kb on + strandat 458.751 kb on - strandat 458.780 kb on - strandat 458.965 kb on + strandat 459.059 kb on + strandat 459.076 kb on - strandat 459.127 kb on - strandat 459.137 kb on + strandat 459.138 kb on - strandat 459.151 kb on - strandat 459.184 kb on - strand, within ECD_00417at 459.207 kb on + strand, within ECD_00417at 459.207 kb on + strand, within ECD_00417at 459.208 kb on - strand, within ECD_00417at 459.208 kb on - strand, within ECD_00417at 459.317 kb on + strandat 459.317 kb on + strandat 459.318 kb on - strandat 459.318 kb on - strandat 459.318 kb on - strandat 459.318 kb on - strandat 459.318 kb on - strandat 459.522 kb on + strand, within ECD_00418at 459.522 kb on + strand, within ECD_00418at 459.528 kb on + strand, within ECD_00418at 459.889 kb on - strandat 459.928 kb on - strandat 459.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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454,669 + -3.2
454,670 - -1.0
454,670 - -0.6
454,670 - -0.4
454,713 + -2.1
454,714 - +0.9
454,734 + -0.6
454,735 - +1.4
454,735 - +0.6
454,736 + -3.3
454,737 - +1.0
454,759 + -0.5
454,759 + +0.4
454,792 + -0.4
454,806 + -0.7
454,807 - +0.7
455,024 + ECD_00415 0.33 -0.1
455,081 + ECD_00415 0.42 +0.5
455,084 + ECD_00415 0.43 +0.1
455,084 + ECD_00415 0.43 +0.1
455,142 + ECD_00415 0.52 +0.7
455,142 + ECD_00415 0.52 +0.0
455,142 + ECD_00415 0.52 +1.7
455,199 + ECD_00415 0.60 +0.6
455,200 - ECD_00415 0.61 -0.5
455,250 + ECD_00415 0.68 +0.8
455,316 + ECD_00415 0.79 +0.5
455,410 + +0.2
455,411 - -0.9
455,588 - -2.2
455,588 - -1.4
455,600 + -0.1
455,635 + -1.6
455,800 + -0.4
455,800 + +1.0
455,800 + +0.4
455,800 + -0.5
455,801 - -1.0
455,801 - -1.0
455,917 + +0.8
455,917 + -0.2
455,917 + +0.1
455,918 - +0.2
456,041 + ECD_00416 0.14 +0.3
456,042 - ECD_00416 0.14 -0.8
456,043 + ECD_00416 0.14 +0.4
456,098 + ECD_00416 0.15 +0.1
456,098 + ECD_00416 0.15 -0.1
456,098 + ECD_00416 0.15 +1.2
456,098 + ECD_00416 0.15 -0.2
456,098 + ECD_00416 0.15 +0.1
456,099 - ECD_00416 0.15 -0.4
456,099 - ECD_00416 0.15 -1.1
456,168 + ECD_00416 0.17 -0.1
456,168 + ECD_00416 0.17 -0.4
456,168 + ECD_00416 0.17 +0.1
456,168 + ECD_00416 0.17 +0.7
456,168 + ECD_00416 0.17 +0.1
456,169 - ECD_00416 0.17 +0.6
456,169 - ECD_00416 0.17 -1.0
456,169 - ECD_00416 0.17 +0.7
456,271 + ECD_00416 0.20 +0.0
456,272 - ECD_00416 0.21 -0.1
456,293 + ECD_00416 0.21 -0.3
456,294 - ECD_00416 0.21 -1.5
456,330 + ECD_00416 0.22 -0.1
456,331 - ECD_00416 0.22 -0.7
456,471 + ECD_00416 0.26 +0.4
456,622 + ECD_00416 0.31 -2.1
456,622 + ECD_00416 0.31 -0.7
456,623 - ECD_00416 0.31 -0.1
456,630 - ECD_00416 0.31 -0.8
456,921 + ECD_00416 0.40 -0.4
457,683 + ECD_00416 0.62 +1.2
457,714 + ECD_00416 0.63 -0.9
457,721 + ECD_00416 0.64 -0.9
457,727 + ECD_00416 0.64 +0.6
457,727 + ECD_00416 0.64 -0.1
457,728 - ECD_00416 0.64 -0.3
457,728 - ECD_00416 0.64 +1.9
457,806 + ECD_00416 0.66 -0.2
457,818 + ECD_00416 0.66 +0.1
457,939 + ECD_00416 0.70 -0.3
457,940 - ECD_00416 0.70 -0.5
458,229 - ECD_00416 0.79 +1.0
458,236 + ECD_00416 0.79 -0.7
458,237 - ECD_00416 0.79 -1.0
458,237 - ECD_00416 0.79 -0.2
458,237 - ECD_00416 0.79 +0.0
458,239 + ECD_00416 0.79 -0.4
458,239 + ECD_00416 0.79 +0.0
458,239 + ECD_00416 0.79 -0.4
458,248 + ECD_00416 0.79 +0.2
458,248 + ECD_00416 0.79 -0.2
458,252 + ECD_00416 0.79 +0.4
458,252 + ECD_00416 0.79 +0.5
458,260 + ECD_00416 0.80 +0.3
458,344 - ECD_00416 0.82 +0.7
458,446 + ECD_00416 0.85 -0.1
458,463 + ECD_00416 0.86 +0.8
458,463 + ECD_00416 0.86 -0.7
458,467 + ECD_00416 0.86 +0.7
458,468 - ECD_00416 0.86 +0.0
458,468 - ECD_00416 0.86 +1.6
458,468 - ECD_00416 0.86 -0.6
458,578 + ECD_00416 0.89 -0.5
458,750 + +0.5
458,750 + +1.0
458,751 - +0.5
458,780 - -0.4
458,965 + -0.3
459,059 + -1.7
459,076 - -0.3
459,127 - -0.0
459,137 + -3.2
459,138 - -0.1
459,151 - +0.5
459,184 - ECD_00417 0.17 +0.4
459,207 + ECD_00417 0.31 -0.3
459,207 + ECD_00417 0.31 +1.0
459,208 - ECD_00417 0.32 +1.8
459,208 - ECD_00417 0.32 +1.2
459,317 + -0.2
459,317 + +0.2
459,318 - +1.7
459,318 - +1.8
459,318 - +1.3
459,318 - +2.1
459,318 - +1.4
459,522 + ECD_00418 0.36 +0.2
459,522 + ECD_00418 0.36 +0.6
459,528 + ECD_00418 0.37 +1.2
459,889 - +0.0
459,928 - +1.1
459,944 + +0.4

Or see this region's nucleotide sequence