Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00391 and ECD_00392 are separated by 208 nucleotides ECD_00392 and ECD_00393 are separated by 191 nucleotides
ECD_00391: ECD_00391 - DNA-binding ATP-dependent protease La, at 427,922 to 430,276
_00391
ECD_00392: ECD_00392 - HU, DNA-binding transcriptional regulator, beta subunit, at 430,485 to 430,757
_00392
ECD_00393: ECD_00393 - periplasmic folding chaperone, has an inactive PPIase domain, at 430,949 to 432,820
_00393
Position (kb) 430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 429.525 kb on - strand, within ECD_00391 at 429.715 kb on - strand, within ECD_00391 at 429.797 kb on + strand, within ECD_00391 at 429.798 kb on - strand, within ECD_00391 at 429.970 kb on + strand, within ECD_00391 at 429.970 kb on + strand, within ECD_00391 at 429.971 kb on - strand, within ECD_00391 at 429.971 kb on - strand, within ECD_00391 at 430.173 kb on + strand at 430.173 kb on + strand at 430.173 kb on + strand at 430.358 kb on + strand at 430.359 kb on - strand at 430.386 kb on - strand at 430.398 kb on - strand at 430.418 kb on - strand at 430.419 kb on + strand at 430.419 kb on + strand at 430.420 kb on - strand at 430.420 kb on - strand at 430.436 kb on + strand at 430.490 kb on + strand at 430.565 kb on + strand, within ECD_00392 at 430.565 kb on + strand, within ECD_00392 at 430.565 kb on + strand, within ECD_00392 at 430.566 kb on - strand, within ECD_00392 at 430.566 kb on - strand, within ECD_00392 at 430.568 kb on + strand, within ECD_00392 at 430.568 kb on + strand, within ECD_00392 at 430.609 kb on + strand, within ECD_00392 at 430.609 kb on + strand, within ECD_00392 at 430.609 kb on + strand, within ECD_00392 at 430.706 kb on + strand, within ECD_00392 at 430.730 kb on + strand at 430.730 kb on + strand at 430.755 kb on + strand at 430.755 kb on + strand at 430.801 kb on + strand at 430.801 kb on + strand at 430.818 kb on + strand at 430.943 kb on + strand at 431.069 kb on + strand at 431.069 kb on + strand at 431.470 kb on + strand, within ECD_00393 at 431.711 kb on + strand, within ECD_00393
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 429,525 - ECD_00391 0.68 -0.4 429,715 - ECD_00391 0.76 -0.7 429,797 + ECD_00391 0.80 -0.3 429,798 - ECD_00391 0.80 -0.3 429,970 + ECD_00391 0.87 -0.8 429,970 + ECD_00391 0.87 +0.8 429,971 - ECD_00391 0.87 +0.7 429,971 - ECD_00391 0.87 -0.1 430,173 + -0.8 430,173 + -0.1 430,173 + -0.7 430,358 + +2.1 430,359 - +0.4 430,386 - +0.3 430,398 - +1.0 430,418 - +0.5 430,419 + +1.8 430,419 + +0.9 430,420 - +1.2 430,420 - +1.3 430,436 + +1.8 430,490 + +0.9 430,565 + ECD_00392 0.29 +1.0 430,565 + ECD_00392 0.29 +2.0 430,565 + ECD_00392 0.29 +1.8 430,566 - ECD_00392 0.30 +0.3 430,566 - ECD_00392 0.30 -0.2 430,568 + ECD_00392 0.30 +1.2 430,568 + ECD_00392 0.30 +1.6 430,609 + ECD_00392 0.45 +1.3 430,609 + ECD_00392 0.45 +2.1 430,609 + ECD_00392 0.45 +2.0 430,706 + ECD_00392 0.81 +1.1 430,730 + +1.7 430,730 + +1.4 430,755 + +1.5 430,755 + +2.2 430,801 + +2.1 430,801 + +1.6 430,818 + +0.6 430,943 + -1.4 431,069 + -1.9 431,069 + -1.7 431,470 + ECD_00393 0.28 -3.4 431,711 + ECD_00393 0.41 -0.8
Or see this region's nucleotide sequence