Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00261 and ECD_00262 are separated by 526 nucleotides ECD_00262 and ECD_00263 are separated by 10 nucleotides
ECD_00261: ECD_00261 - reactive chlorine species (RCS)-specific activator of the rcl genes, at 289,855 to 290,709
_00261
ECD_00262: ECD_00262 - cysteine-rich LutA family protein; putative electron transport chain YkgEFG component, at 291,236 to 291,955
_00262
ECD_00263: ECD_00263 - ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component, at 291,966 to 293,393
_00263
Position (kb) 291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 290.349 kb on + strand, within ECD_00261 at 290.402 kb on + strand, within ECD_00261 at 290.402 kb on + strand, within ECD_00261 at 291.205 kb on + strand at 291.231 kb on + strand at 291.389 kb on - strand, within ECD_00262 at 291.454 kb on + strand, within ECD_00262 at 291.479 kb on + strand, within ECD_00262 at 291.688 kb on + strand, within ECD_00262 at 291.689 kb on - strand, within ECD_00262 at 291.742 kb on + strand, within ECD_00262 at 291.742 kb on + strand, within ECD_00262 at 291.742 kb on + strand, within ECD_00262 at 291.845 kb on + strand, within ECD_00262 at 291.849 kb on + strand, within ECD_00262 at 291.849 kb on + strand, within ECD_00262 at 291.850 kb on - strand, within ECD_00262 at 291.928 kb on + strand at 291.928 kb on + strand at 291.983 kb on + strand at 292.064 kb on + strand at 292.157 kb on + strand, within ECD_00263 at 292.259 kb on - strand, within ECD_00263 at 292.386 kb on + strand, within ECD_00263 at 292.386 kb on + strand, within ECD_00263 at 292.387 kb on - strand, within ECD_00263 at 292.567 kb on + strand, within ECD_00263 at 292.649 kb on + strand, within ECD_00263 at 292.670 kb on + strand, within ECD_00263 at 292.694 kb on + strand, within ECD_00263 at 292.717 kb on + strand, within ECD_00263 at 292.717 kb on + strand, within ECD_00263 at 292.717 kb on + strand, within ECD_00263 at 292.724 kb on - strand, within ECD_00263 at 292.724 kb on - strand, within ECD_00263 at 292.925 kb on + strand, within ECD_00263 at 292.926 kb on - strand, within ECD_00263 at 292.939 kb on - strand, within ECD_00263 at 292.946 kb on + strand, within ECD_00263
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 290,349 + ECD_00261 0.58 -0.8 290,402 + ECD_00261 0.64 -0.2 290,402 + ECD_00261 0.64 -2.5 291,205 + +1.0 291,231 + +0.3 291,389 - ECD_00262 0.21 -3.0 291,454 + ECD_00262 0.30 -2.5 291,479 + ECD_00262 0.34 +0.4 291,688 + ECD_00262 0.63 +0.6 291,689 - ECD_00262 0.63 -2.1 291,742 + ECD_00262 0.70 +0.4 291,742 + ECD_00262 0.70 -0.4 291,742 + ECD_00262 0.70 +0.0 291,845 + ECD_00262 0.85 -0.2 291,849 + ECD_00262 0.85 -0.1 291,849 + ECD_00262 0.85 -1.8 291,850 - ECD_00262 0.85 -3.4 291,928 + -0.3 291,928 + -0.4 291,983 + -2.8 292,064 + +0.4 292,157 + ECD_00263 0.13 -1.0 292,259 - ECD_00263 0.21 -2.0 292,386 + ECD_00263 0.29 -1.1 292,386 + ECD_00263 0.29 -1.3 292,387 - ECD_00263 0.29 -1.7 292,567 + ECD_00263 0.42 -1.6 292,649 + ECD_00263 0.48 -0.4 292,670 + ECD_00263 0.49 +0.6 292,694 + ECD_00263 0.51 -0.8 292,717 + ECD_00263 0.53 -0.9 292,717 + ECD_00263 0.53 -1.1 292,717 + ECD_00263 0.53 +1.1 292,724 - ECD_00263 0.53 -1.7 292,724 - ECD_00263 0.53 -3.1 292,925 + ECD_00263 0.67 -2.2 292,926 - ECD_00263 0.67 -0.2 292,939 - ECD_00263 0.68 -1.5 292,946 + ECD_00263 0.69 +0.0
Or see this region's nucleotide sequence