Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00256 and ECD_00257 are separated by 139 nucleotides ECD_00257 and ECD_00258 are separated by 590 nucleotides
ECD_00256: ECD_00256 - attaching and effacing protein, pathogenesis factor, at 284,540 to 285,772
_00256
ECD_00257: ECD_00257 - putative DNA-binding transcriptional regulator, at 285,912 to 286,763
_00257
ECD_00258: ECD_00258 - reactive chlorine species (RCS) stress resistance inner membrane protein, at 287,354 to 287,947
_00258
Position (kb) 285
286
287 Strain fitness (log2 ratio) -2
-1
0
1 at 285.311 kb on + strand, within ECD_00256 at 285.311 kb on + strand, within ECD_00256 at 285.311 kb on + strand, within ECD_00256 at 285.312 kb on - strand, within ECD_00256 at 285.320 kb on + strand, within ECD_00256 at 285.321 kb on - strand, within ECD_00256 at 285.323 kb on + strand, within ECD_00256 at 285.355 kb on + strand, within ECD_00256 at 285.379 kb on + strand, within ECD_00256 at 285.398 kb on + strand, within ECD_00256 at 285.398 kb on + strand, within ECD_00256 at 285.488 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.533 kb on - strand, within ECD_00256 at 285.533 kb on - strand, within ECD_00256 at 285.533 kb on - strand, within ECD_00256 at 285.631 kb on + strand, within ECD_00256 at 285.659 kb on + strand at 285.661 kb on + strand at 285.770 kb on + strand at 286.039 kb on - strand, within ECD_00257 at 286.111 kb on + strand, within ECD_00257 at 286.284 kb on + strand, within ECD_00257 at 286.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 285,311 + ECD_00256 0.63 +0.8 285,311 + ECD_00256 0.63 +0.2 285,311 + ECD_00256 0.63 -0.0 285,312 - ECD_00256 0.63 -0.0 285,320 + ECD_00256 0.63 -0.1 285,321 - ECD_00256 0.63 -0.4 285,323 + ECD_00256 0.64 -0.1 285,355 + ECD_00256 0.66 +0.6 285,379 + ECD_00256 0.68 -0.4 285,398 + ECD_00256 0.70 -0.6 285,398 + ECD_00256 0.70 +0.5 285,488 + ECD_00256 0.77 -0.2 285,532 + ECD_00256 0.80 -0.9 285,532 + ECD_00256 0.80 -0.5 285,532 + ECD_00256 0.80 -0.8 285,532 + ECD_00256 0.80 -1.0 285,532 + ECD_00256 0.80 +0.4 285,533 - ECD_00256 0.81 -1.1 285,533 - ECD_00256 0.81 -1.8 285,533 - ECD_00256 0.81 -1.9 285,631 + ECD_00256 0.88 -0.3 285,659 + -0.9 285,661 + -1.5 285,770 + -1.6 286,039 - ECD_00257 0.15 -2.0 286,111 + ECD_00257 0.23 -1.1 286,284 + ECD_00257 0.44 -2.1 286,889 - -1.0
Or see this region's nucleotide sequence