Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_t00003 and ECD_00200 are separated by 162 nucleotides ECD_00200 and ECD_00201 overlap by 4 nucleotides ECD_00201 and ECD_00202 are separated by 240 nucleotides
ECD_t00003: ECD_t00003 - tRNA-Asp, at 231,855 to 231,931
_t00003
ECD_00200: ECD_00200 - 2,5-diketo-D-gluconate reductase B, at 232,094 to 232,897
_00200
ECD_00201: ECD_00201 - LysR family putative transcriptional regulator, at 232,894 to 233,808
_00201
ECD_00202: ECD_00202 - endo/exonuclease/phosphatase family protein, at 234,049 to 234,849
_00202
Position (kb) 232
233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 231.934 kb on + strand at 231.934 kb on + strand at 231.937 kb on + strand at 232.362 kb on - strand, within ECD_00200 at 232.424 kb on - strand, within ECD_00200 at 232.566 kb on - strand, within ECD_00200 at 232.625 kb on + strand, within ECD_00200 at 232.625 kb on + strand, within ECD_00200 at 232.625 kb on + strand, within ECD_00200 at 232.626 kb on - strand, within ECD_00200 at 232.626 kb on - strand, within ECD_00200 at 232.646 kb on - strand, within ECD_00200 at 232.895 kb on + strand at 233.163 kb on - strand, within ECD_00201 at 233.163 kb on - strand, within ECD_00201 at 233.177 kb on - strand, within ECD_00201 at 233.177 kb on - strand, within ECD_00201 at 233.177 kb on - strand, within ECD_00201 at 233.177 kb on - strand, within ECD_00201 at 233.191 kb on - strand, within ECD_00201 at 233.191 kb on - strand, within ECD_00201 at 233.368 kb on - strand, within ECD_00201 at 233.472 kb on + strand, within ECD_00201 at 233.545 kb on - strand, within ECD_00201 at 233.638 kb on - strand, within ECD_00201 at 233.729 kb on - strand at 233.729 kb on - strand at 233.892 kb on + strand at 233.944 kb on + strand at 233.944 kb on + strand at 233.995 kb on + strand at 234.027 kb on - strand at 234.065 kb on - strand at 234.201 kb on - strand, within ECD_00202 at 234.203 kb on - strand, within ECD_00202 at 234.203 kb on - strand, within ECD_00202 at 234.203 kb on - strand, within ECD_00202 at 234.299 kb on + strand, within ECD_00202 at 234.303 kb on - strand, within ECD_00202 at 234.303 kb on - strand, within ECD_00202 at 234.319 kb on - strand, within ECD_00202 at 234.510 kb on + strand, within ECD_00202 at 234.513 kb on - strand, within ECD_00202 at 234.550 kb on - strand, within ECD_00202 at 234.552 kb on + strand, within ECD_00202 at 234.552 kb on + strand, within ECD_00202 at 234.553 kb on - strand, within ECD_00202 at 234.553 kb on - strand, within ECD_00202 at 234.582 kb on - strand, within ECD_00202 at 234.636 kb on + strand, within ECD_00202 at 234.654 kb on - strand, within ECD_00202
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 231,934 + +1.5 231,934 + +1.6 231,937 + +1.7 232,362 - ECD_00200 0.33 -0.7 232,424 - ECD_00200 0.41 -2.1 232,566 - ECD_00200 0.59 +0.8 232,625 + ECD_00200 0.66 -1.0 232,625 + ECD_00200 0.66 -2.9 232,625 + ECD_00200 0.66 -0.3 232,626 - ECD_00200 0.66 -2.2 232,626 - ECD_00200 0.66 -1.6 232,646 - ECD_00200 0.69 -2.6 232,895 + -1.9 233,163 - ECD_00201 0.29 +0.1 233,163 - ECD_00201 0.29 -0.3 233,177 - ECD_00201 0.31 -1.1 233,177 - ECD_00201 0.31 -0.0 233,177 - ECD_00201 0.31 -0.1 233,177 - ECD_00201 0.31 +0.2 233,191 - ECD_00201 0.32 -1.5 233,191 - ECD_00201 0.32 -0.4 233,368 - ECD_00201 0.52 -0.8 233,472 + ECD_00201 0.63 -2.8 233,545 - ECD_00201 0.71 -0.2 233,638 - ECD_00201 0.81 -0.3 233,729 - +2.6 233,729 - -0.4 233,892 + -1.6 233,944 + -0.7 233,944 + -0.8 233,995 + -0.3 234,027 - -0.5 234,065 - -1.2 234,201 - ECD_00202 0.19 -0.7 234,203 - ECD_00202 0.19 -1.8 234,203 - ECD_00202 0.19 -1.2 234,203 - ECD_00202 0.19 -0.9 234,299 + ECD_00202 0.31 -1.9 234,303 - ECD_00202 0.32 -2.6 234,303 - ECD_00202 0.32 -1.0 234,319 - ECD_00202 0.34 -1.9 234,510 + ECD_00202 0.58 -1.1 234,513 - ECD_00202 0.58 -2.7 234,550 - ECD_00202 0.63 -1.3 234,552 + ECD_00202 0.63 -1.3 234,552 + ECD_00202 0.63 -1.8 234,553 - ECD_00202 0.63 -0.8 234,553 - ECD_00202 0.63 -0.9 234,582 - ECD_00202 0.67 -2.4 234,636 + ECD_00202 0.73 -1.1 234,654 - ECD_00202 0.76 -2.4
Or see this region's nucleotide sequence