Strain Fitness in Escherichia coli BW25113 around b4360
Experiment: pinene 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | pinene 5 vol% |
---|---|---|---|---|---|
remove | |||||
4,596,776 | + | mdoB | b4359 | 0.70 | +0.8 |
4,596,783 | - | mdoB | b4359 | 0.70 | +0.1 |
4,596,784 | - | mdoB | b4359 | 0.70 | +0.3 |
4,596,806 | - | mdoB | b4359 | 0.71 | +1.2 |
4,596,806 | - | mdoB | b4359 | 0.71 | -0.7 |
4,596,810 | - | mdoB | b4359 | 0.71 | -0.2 |
4,596,813 | - | mdoB | b4359 | 0.72 | -0.3 |
4,596,813 | - | mdoB | b4359 | 0.72 | -0.1 |
4,596,838 | + | mdoB | b4359 | 0.73 | +1.4 |
4,596,838 | + | mdoB | b4359 | 0.73 | +0.1 |
4,596,900 | + | mdoB | b4359 | 0.75 | -0.3 |
4,596,900 | + | mdoB | b4359 | 0.75 | +0.3 |
4,596,920 | - | mdoB | b4359 | 0.76 | +0.0 |
4,596,935 | + | mdoB | b4359 | 0.77 | +0.6 |
4,596,973 | - | mdoB | b4359 | 0.79 | +0.1 |
4,596,973 | - | mdoB | b4359 | 0.79 | +0.4 |
4,596,975 | + | mdoB | b4359 | 0.79 | -0.4 |
4,597,011 | + | mdoB | b4359 | 0.80 | +0.4 |
4,597,158 | + | mdoB | b4359 | 0.87 | +0.4 |
4,597,158 | + | mdoB | b4359 | 0.87 | +1.7 |
4,597,173 | + | mdoB | b4359 | 0.87 | -0.7 |
4,597,173 | + | mdoB | b4359 | 0.87 | +0.3 |
4,597,183 | - | mdoB | b4359 | 0.88 | +0.8 |
4,597,183 | - | mdoB | b4359 | 0.88 | -0.1 |
4,597,190 | + | mdoB | b4359 | 0.88 | +0.6 |
4,597,190 | + | mdoB | b4359 | 0.88 | +1.9 |
4,597,195 | - | mdoB | b4359 | 0.88 | +0.1 |
4,597,195 | - | mdoB | b4359 | 0.88 | +0.1 |
4,597,199 | + | mdoB | b4359 | 0.88 | -0.4 |
4,597,210 | - | mdoB | b4359 | 0.89 | +1.0 |
4,597,215 | - | mdoB | b4359 | 0.89 | -0.0 |
4,597,220 | - | mdoB | b4359 | 0.89 | +1.4 |
4,597,220 | - | mdoB | b4359 | 0.89 | +0.8 |
4,597,270 | + | +0.3 | |||
4,597,276 | + | -0.0 | |||
4,597,276 | + | +0.5 | |||
4,597,365 | - | +0.5 | |||
4,597,398 | - | -0.9 | |||
4,597,437 | - | +0.7 | |||
4,597,527 | - | +1.8 | |||
4,597,531 | + | +0.2 | |||
4,597,531 | + | +0.2 | |||
4,597,538 | + | +0.4 | |||
4,597,538 | + | +0.6 | |||
4,597,543 | - | +0.1 | |||
4,597,616 | + | -0.4 | |||
4,597,626 | + | -0.2 | |||
4,597,626 | + | +0.1 | |||
4,597,634 | - | +0.4 | |||
4,597,634 | - | +0.3 | |||
4,597,656 | + | -2.0 | |||
4,597,671 | - | +0.9 | |||
4,597,695 | + | -0.4 | |||
4,597,738 | - | +0.0 | |||
4,597,738 | - | +1.6 | |||
4,597,738 | - | -0.2 | |||
4,597,750 | - | +0.6 | |||
4,597,750 | - | +0.8 | |||
4,597,751 | - | -0.3 | |||
4,597,755 | - | +0.6 | |||
4,597,762 | + | +0.8 | |||
4,597,802 | - | yjjA | b4360 | 0.17 | +0.0 |
4,597,892 | + | yjjA | b4360 | 0.35 | -1.0 |
4,597,941 | + | yjjA | b4360 | 0.45 | -1.7 |
4,597,978 | - | yjjA | b4360 | 0.53 | +0.1 |
4,598,000 | - | yjjA | b4360 | 0.57 | -0.4 |
4,598,117 | - | yjjA | b4360 | 0.81 | +0.1 |
4,598,220 | - | -0.2 | |||
4,598,220 | - | +0.5 | |||
4,598,235 | - | -0.8 | |||
4,598,240 | - | +0.8 | |||
4,598,240 | - | -0.4 |
Or see this region's nucleotide sequence