Strain Fitness in Pseudomonas putida KT2440 around PP_4921

Experiment: pinene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 10 vol%
5,591,780	+		PP_4919	0.84	+0.3
5,591,780	+		PP_4919	0.84	+0.5
5,591,780	+		PP_4919	0.84	+0.2
5,591,781	-		PP_4919	0.84	+0.9
5,591,781	-		PP_4919	0.84	-0.6
5,591,796	+		PP_4919	0.86	-0.5
5,591,797	-		PP_4919	0.87	-0.6
5,591,891	+				+0.6
5,591,892	-				-2.1
5,591,909	+				+1.7
5,591,984	+				+1.7
5,591,985	-				+1.0
5,591,989	+				+1.7
5,591,989	+				-0.5
5,591,989	+				+0.2
5,591,990	-				-0.6
5,591,990	-				-0.8
5,592,133	+		PP_4920	0.10	-0.1
5,592,331	+				+1.7
5,592,332	-		PP_4920	0.37	+0.9
5,592,343	+		PP_4920	0.39	-0.8
5,592,343	+		PP_4920	0.39	-1.4
5,592,343	+		PP_4920	0.39	-0.2
5,592,344	-		PP_4920	0.39	+1.0
5,592,344	-		PP_4920	0.39	+0.2
5,592,367	-		PP_4920	0.42	+0.9
5,592,376	+		PP_4920	0.43	+0.6
5,592,377	-		PP_4920	0.43	+0.9
5,592,377	-		PP_4920	0.43	-0.8
5,592,436	+		PP_4920	0.51	-1.3
5,592,436	+		PP_4920	0.51	-0.8
5,592,437	-		PP_4920	0.51	+3.1
5,592,437	-		PP_4920	0.51	-0.2
5,592,437	-		PP_4920	0.51	-1.0
5,592,487	+		PP_4920	0.58	-0.3
5,592,487	+		PP_4920	0.58	+0.7
5,592,487	+		PP_4920	0.58	-0.5
5,592,671	-		PP_4920	0.82	-0.1
5,592,692	-		PP_4920	0.85	+0.6
5,592,692	-		PP_4920	0.85	-0.7
5,592,692	-		PP_4920	0.85	-0.1
5,592,692	-		PP_4920	0.85	-0.4
5,592,692	-		PP_4920	0.85	-0.6
5,592,692	-		PP_4920	0.85	+0.0
5,592,700	+		PP_4920	0.86	-0.0
5,592,701	-		PP_4920	0.86	-0.3
5,592,701	-		PP_4920	0.86	-1.0
5,592,701	-		PP_4920	0.86	-0.5
5,592,716	-		PP_4920	0.88	+1.0
5,592,768	-				-0.6
5,592,807	-				-0.8
5,592,889	-				-1.2
5,592,975	+		PP_4921	0.16	-0.6
5,592,975	+		PP_4921	0.16	-1.2
5,592,975	+		PP_4921	0.16	+0.7
5,592,976	-		PP_4921	0.16	+0.4
5,592,976	-		PP_4921	0.16	-0.8
5,593,045	-		PP_4921	0.21	-1.0
5,593,195	+		PP_4921	0.33	+0.2
5,593,195	+		PP_4921	0.33	-0.1
5,593,196	-		PP_4921	0.33	-0.2
5,593,281	+		PP_4921	0.40	-0.0
5,593,282	-		PP_4921	0.40	+0.4
5,593,282	-		PP_4921	0.40	-0.7
5,593,323	+		PP_4921	0.43	+0.4
5,593,323	+		PP_4921	0.43	-1.0
5,593,377	+				+3.3
5,593,559	+		PP_4921	0.61	-1.9
5,593,560	-		PP_4921	0.62	-1.3
5,593,560	-		PP_4921	0.62	-0.2
5,593,560	-		PP_4921	0.62	-0.5
5,593,709	-		PP_4921	0.73	-1.9
5,593,832	-		PP_4921	0.83	-1.2
5,593,908	-		PP_4921	0.89	-0.9
5,594,077	+				+0.8
5,594,077	+				+0.7
5,594,077	+				+0.1
5,594,078	-				-0.9
5,594,086	+				+0.7
5,594,086	+				+0.1
5,594,086	+				+1.1
5,594,086	+				+0.1
5,594,087	-				+0.0
5,594,087	-				+0.3
5,594,087	-				+0.1
5,594,087	-				-0.4
5,594,185	-				-0.6
5,594,185	-				+0.6
5,594,185	-				+0.3
5,594,212	-				+0.8
5,594,301	+				-2.0
5,594,301	+				+1.4
5,594,302	-				+0.9
5,594,361	-				-1.1
5,594,550	+		PP_4922	0.19	-0.6
5,594,551	-		PP_4922	0.19	-1.5
5,594,551	-		PP_4922	0.19	+0.3
5,594,616	+		PP_4922	0.22	+0.7
5,594,616	+		PP_4922	0.22	-0.7
5,594,617	-		PP_4922	0.22	-1.3
5,594,721	+		PP_4922	0.28	-1.7
5,594,722	-		PP_4922	0.28	+0.5
5,594,943	+		PP_4922	0.40	-1.2
5,594,943	+		PP_4922	0.40	+0.9
5,594,943	+		PP_4922	0.40	+0.1
5,594,944	-		PP_4922	0.40	+0.2
5,594,982	+		PP_4922	0.42	-0.3
5,594,983	-		PP_4922	0.42	+0.5