Strain Fitness in Pseudomonas putida KT2440 around PP_4601

Experiment: pinene 10 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4599 and PP_4600 are separated by 148 nucleotidesPP_4600 and PP_4601 are separated by 141 nucleotidesPP_4601 and PP_4602 overlap by 13 nucleotides PP_4599: PP_4599 - transposase, at 5,219,101 to 5,220,066 _4599 PP_4600: PP_4600 - molybdenum cofactor biosynthesis protein B, at 5,220,215 to 5,220,733 _4600 PP_4601: PP_4601 - Transcriptional regulator, LysR family, at 5,220,875 to 5,221,762 _4601 PP_4602: PP_4602 - Transcriptional regulator, AraC family, at 5,221,750 to 5,222,589 _4602 Position (kb) 5220 5221 5222Strain fitness (log2 ratio) -2 -1 0 1 2at 5220.332 kb on + strand, within PP_4600at 5220.332 kb on + strand, within PP_4600at 5220.332 kb on + strand, within PP_4600at 5220.332 kb on + strand, within PP_4600at 5220.332 kb on + strand, within PP_4600at 5220.332 kb on + strand, within PP_4600at 5220.333 kb on - strand, within PP_4600at 5220.333 kb on - strand, within PP_4600at 5220.333 kb on - strand, within PP_4600at 5220.333 kb on - strand, within PP_4600at 5220.567 kb on + strand, within PP_4600at 5220.567 kb on + strand, within PP_4600at 5220.567 kb on + strand, within PP_4600at 5220.568 kb on - strand, within PP_4600at 5220.650 kb on - strand, within PP_4600at 5220.660 kb on + strand, within PP_4600at 5220.661 kb on - strand, within PP_4600at 5220.661 kb on - strand, within PP_4600at 5220.767 kb on + strandat 5220.767 kb on + strandat 5220.768 kb on - strandat 5220.768 kb on - strandat 5220.799 kb on - strandat 5220.826 kb on + strandat 5220.826 kb on + strandat 5220.827 kb on - strandat 5220.842 kb on + strandat 5220.843 kb on - strandat 5220.854 kb on - strandat 5220.952 kb on + strandat 5220.952 kb on + strandat 5220.952 kb on + strandat 5220.952 kb on + strandat 5220.953 kb on - strandat 5221.303 kb on + strand, within PP_4601at 5221.304 kb on - strand, within PP_4601at 5221.304 kb on - strand, within PP_4601at 5221.311 kb on - strand, within PP_4601at 5221.473 kb on - strand, within PP_4601at 5221.556 kb on - strand, within PP_4601at 5221.578 kb on + strand, within PP_4601at 5221.578 kb on + strand, within PP_4601at 5221.578 kb on + strand, within PP_4601at 5221.578 kb on + strand, within PP_4601at 5221.578 kb on + strand, within PP_4601at 5221.579 kb on - strand, within PP_4601at 5221.579 kb on - strand, within PP_4601at 5221.579 kb on - strand, within PP_4601at 5221.642 kb on - strand, within PP_4601at 5221.782 kb on - strandat 5221.795 kb on - strandat 5221.844 kb on + strand, within PP_4602at 5221.845 kb on - strand, within PP_4602at 5221.964 kb on + strand, within PP_4602at 5221.964 kb on + strand, within PP_4602at 5221.964 kb on + strand, within PP_4602at 5221.989 kb on + strand, within PP_4602at 5222.075 kb on + strand, within PP_4602at 5222.076 kb on - strand, within PP_4602at 5222.154 kb on - strand, within PP_4602at 5222.154 kb on - strand, within PP_4602at 5222.201 kb on + strand, within PP_4602at 5222.268 kb on + strand, within PP_4602at 5222.269 kb on - strand, within PP_4602at 5222.378 kb on + strand, within PP_4602at 5222.504 kb on + strand, within PP_4602

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pinene 10 vol%
remove
5,220,332 + PP_4600 0.23 -1.5
5,220,332 + PP_4600 0.23 +0.4
5,220,332 + PP_4600 0.23 +1.1
5,220,332 + PP_4600 0.23 -2.3
5,220,332 + PP_4600 0.23 -0.7
5,220,332 + PP_4600 0.23 +0.1
5,220,333 - PP_4600 0.23 -0.6
5,220,333 - PP_4600 0.23 -1.0
5,220,333 - PP_4600 0.23 -0.3
5,220,333 - PP_4600 0.23 +0.3
5,220,567 + PP_4600 0.68 +0.0
5,220,567 + PP_4600 0.68 -0.1
5,220,567 + PP_4600 0.68 +0.3
5,220,568 - PP_4600 0.68 +0.9
5,220,650 - PP_4600 0.84 -0.4
5,220,660 + PP_4600 0.86 +0.2
5,220,661 - PP_4600 0.86 -2.4
5,220,661 - PP_4600 0.86 +0.3
5,220,767 + -0.4
5,220,767 + -0.1
5,220,768 - +0.4
5,220,768 - -0.3
5,220,799 - -1.1
5,220,826 + -0.2
5,220,826 + +1.2
5,220,827 - -0.4
5,220,842 + +0.8
5,220,843 - +0.6
5,220,854 - +1.8
5,220,952 + -0.3
5,220,952 + -0.5
5,220,952 + -0.7
5,220,952 + +1.6
5,220,953 - -0.5
5,221,303 + PP_4601 0.48 -0.4
5,221,304 - PP_4601 0.48 +0.7
5,221,304 - PP_4601 0.48 +0.2
5,221,311 - PP_4601 0.49 +0.1
5,221,473 - PP_4601 0.67 -0.1
5,221,556 - PP_4601 0.77 -0.0
5,221,578 + PP_4601 0.79 +0.2
5,221,578 + PP_4601 0.79 +0.8
5,221,578 + PP_4601 0.79 -0.3
5,221,578 + PP_4601 0.79 -0.4
5,221,578 + PP_4601 0.79 -0.1
5,221,579 - PP_4601 0.79 +0.2
5,221,579 - PP_4601 0.79 -1.0
5,221,579 - PP_4601 0.79 +0.1
5,221,642 - PP_4601 0.86 +0.4
5,221,782 - +0.4
5,221,795 - +0.1
5,221,844 + PP_4602 0.11 -0.7
5,221,845 - PP_4602 0.11 +0.9
5,221,964 + PP_4602 0.25 -0.4
5,221,964 + PP_4602 0.25 -0.3
5,221,964 + PP_4602 0.25 -0.4
5,221,989 + PP_4602 0.28 +0.1
5,222,075 + PP_4602 0.39 -0.2
5,222,076 - PP_4602 0.39 +0.2
5,222,154 - PP_4602 0.48 -0.7
5,222,154 - PP_4602 0.48 +0.9
5,222,201 + PP_4602 0.54 +1.7
5,222,268 + PP_4602 0.62 -0.9
5,222,269 - PP_4602 0.62 +0.2
5,222,378 + PP_4602 0.75 +0.1
5,222,504 + PP_4602 0.90 +0.3

Or see this region's nucleotide sequence