Strain Fitness in Pseudomonas putida KT2440 around PP_4160

Experiment: pinene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 10 vol%
4,700,699	+				+0.2
4,700,699	+				-0.6
4,700,700	-				+0.9
4,700,746	+				+0.3
4,700,747	-				-0.4
4,700,768	+				+0.3
4,700,812	+				-0.1
4,700,992	-		PP_4159	0.28	-0.6
4,701,169	-		PP_4159	0.59	-0.0
4,701,308	-		PP_4159	0.84	+0.4
4,701,380	+				-0.3
4,701,380	+				+0.4
4,701,384	+				+2.4
4,701,384	+				-0.0
4,701,384	+				-0.7
4,701,384	+				-0.2
4,701,384	+				+0.7
4,701,385	-				+0.0
4,701,385	-				-0.6
4,701,385	-				-0.2
4,701,385	-				+0.1
4,701,385	-				-1.2
4,701,570	-				+0.0
4,701,659	-		PP_4160	0.12	-0.5
4,701,694	+		PP_4160	0.14	-1.8
4,701,771	+		PP_4160	0.18	+0.8
4,701,771	+		PP_4160	0.18	+1.9
4,701,772	-		PP_4160	0.18	-0.6
4,701,861	+		PP_4160	0.22	+0.1
4,701,861	+		PP_4160	0.22	+0.1
4,701,861	+		PP_4160	0.22	+0.7
4,701,861	+		PP_4160	0.22	+0.2
4,701,861	+		PP_4160	0.22	-0.3
4,701,862	-		PP_4160	0.22	-1.7
4,702,384	+		PP_4160	0.48	-1.5
4,702,385	-		PP_4160	0.48	-0.3
4,702,464	-		PP_4160	0.52	-0.0
4,702,541	+		PP_4160	0.55	-0.1
4,702,541	+		PP_4160	0.55	-0.9
4,702,542	-		PP_4160	0.55	+0.6
4,702,542	-		PP_4160	0.55	-0.4
4,702,542	-		PP_4160	0.55	+0.1
4,702,883	+		PP_4160	0.72	-0.4
4,702,910	+		PP_4160	0.73	+0.7
4,702,911	-		PP_4160	0.73	+0.2
4,702,950	+		PP_4160	0.75	+0.2
4,703,096	-		PP_4160	0.82	+1.1
4,703,326	-				+0.5
4,703,483	+				+0.1
4,703,483	+				-0.4
4,703,483	+				-0.9
4,703,484	-				+0.2
4,703,484	-				+0.2
4,703,484	-				+0.1
4,703,484	-				+0.3
4,703,484	-				+0.1
4,703,713	+		PP_4161	0.14	-0.5
4,703,771	+		PP_4161	0.18	+0.3
4,703,773	+		PP_4161	0.18	-0.7
4,703,774	-		PP_4161	0.18	+0.1
4,703,774	-		PP_4161	0.18	+0.4
4,703,774	-		PP_4161	0.18	+0.5
4,703,779	+		PP_4161	0.18	-1.1
4,703,780	-		PP_4161	0.18	+0.1
4,703,862	+		PP_4161	0.23	+0.2
4,703,863	-		PP_4161	0.23	-1.4
4,703,941	+		PP_4161	0.28	+0.6
4,703,942	-		PP_4161	0.28	+0.2
4,704,010	+		PP_4161	0.32	+0.0
4,704,037	-		PP_4161	0.34	+0.5
4,704,335	-		PP_4161	0.51	+0.1