Strain Fitness in Pseudomonas putida KT2440 around PP_3299

Experiment: pinene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 10 vol%
3,730,816	+				-0.8
3,730,816	+				+0.9
3,730,817	-				+1.1
3,730,817	-				-0.4
3,730,817	-				-0.4
3,730,823	+				+0.2
3,730,823	+				-0.7
3,730,823	+				+1.9
3,730,824	-				-0.4
3,730,824	-				-0.2
3,730,842	+				+0.4
3,730,842	+				+0.0
3,730,843	-				-0.4
3,730,843	-				+1.2
3,730,843	-				-0.6
3,730,993	-				-0.2
3,731,055	+				+1.2
3,731,055	+				+2.7
3,731,055	+				+0.6
3,731,056	-				-0.7
3,731,059	+				+0.1
3,731,059	+				-0.5
3,731,060	-				-0.3
3,731,101	-				+0.5
3,731,101	-				+0.6
3,731,162	+		PP_3298	0.12	+0.1
3,731,163	-		PP_3298	0.12	-0.4
3,731,233	+		PP_3298	0.26	+0.1
3,731,248	-		PP_3298	0.29	-0.6
3,731,257	-		PP_3298	0.31	-0.6
3,731,285	-		PP_3298	0.36	-0.2
3,731,290	+		PP_3298	0.37	+0.4
3,731,290	+		PP_3298	0.37	-0.5
3,731,290	+		PP_3298	0.37	+0.5
3,731,291	-		PP_3298	0.37	-0.9
3,731,291	-		PP_3298	0.37	+0.4
3,731,291	-		PP_3298	0.37	+0.0
3,731,291	-		PP_3298	0.37	-0.2
3,731,291	-		PP_3298	0.37	-1.4
3,731,291	-		PP_3298	0.37	+0.5
3,731,396	+		PP_3298	0.58	-1.6
3,731,397	-		PP_3298	0.58	+0.2
3,731,435	-		PP_3298	0.66	+1.1
3,731,572	-				+0.6
3,731,616	+				+0.8
3,731,616	+				-0.7
3,731,617	-				+0.7
3,731,617	-				-1.2
3,731,651	+				-0.0
3,731,651	+				-0.8
3,731,652	-				-1.2
3,731,714	+				+1.5
3,731,742	+				+0.7
3,731,743	-				-0.1
3,731,743	-				-1.1
3,731,766	-				-1.0
3,731,766	-				-0.5
3,731,830	-				-0.2
3,731,839	+				+0.5
3,731,839	+				+0.8
3,731,839	+				+1.6
3,731,840	-				+0.0
3,731,840	-				+0.3
3,731,933	+		PP_3299	0.11	-1.1
3,731,951	+		PP_3299	0.12	-0.5
3,731,952	-		PP_3299	0.12	+0.5
3,731,952	-		PP_3299	0.12	-0.2
3,731,985	-		PP_3299	0.14	-0.3
3,732,084	+		PP_3299	0.21	+0.3
3,732,084	+		PP_3299	0.21	+0.4
3,732,084	+		PP_3299	0.21	-0.1
3,732,085	-		PP_3299	0.21	+0.9
3,732,125	+		PP_3299	0.24	+0.0
3,732,179	+				+0.5
3,732,180	-		PP_3299	0.28	-0.4
3,732,180	-		PP_3299	0.28	-0.3
3,732,226	+				+0.1
3,732,227	-		PP_3299	0.31	-0.3
3,732,252	-		PP_3299	0.32	-2.2
3,732,270	+		PP_3299	0.34	+1.7
3,732,271	-		PP_3299	0.34	-0.1
3,732,433	+		PP_3299	0.45	+0.3
3,732,553	-		PP_3299	0.53	-1.6
3,732,669	+		PP_3299	0.61	+0.7
3,732,669	+		PP_3299	0.61	-1.5
3,732,669	+		PP_3299	0.61	-1.1
3,732,669	+		PP_3299	0.61	+0.1
3,732,670	-		PP_3299	0.61	-0.2
3,732,670	-		PP_3299	0.61	-0.3
3,732,670	-		PP_3299	0.61	+1.1
3,732,736	-		PP_3299	0.66	-0.4
3,732,816	+		PP_3299	0.71	+1.2
3,732,816	+		PP_3299	0.71	-0.0
3,732,816	+		PP_3299	0.71	+0.9
3,732,816	+		PP_3299	0.71	-0.7
3,732,817	-		PP_3299	0.71	-1.2
3,732,837	+		PP_3299	0.72	+0.6
3,732,838	-		PP_3299	0.72	-0.5
3,732,838	-		PP_3299	0.72	+1.0
3,732,972	-		PP_3299	0.82	+0.6
3,733,122	+				+1.1
3,733,123	-				-0.2
3,733,153	+				+0.4
3,733,155	+				+0.3
3,733,269	-				+0.1
3,733,318	-				-0.3
3,733,409	-		PP_3300	0.16	+1.6
3,733,414	+		PP_3300	0.17	-0.1
3,733,468	+		PP_3300	0.25	-0.4
3,733,468	+		PP_3300	0.25	-0.1
3,733,474	+		PP_3300	0.26	+0.0
3,733,475	-		PP_3300	0.27	+0.4
3,733,475	-		PP_3300	0.27	+1.2
3,733,601	+		PP_3300	0.47	-0.2
3,733,601	+		PP_3300	0.47	-0.2
3,733,602	-		PP_3300	0.47	-0.0
3,733,658	-		PP_3300	0.56	-0.2
3,733,658	-		PP_3300	0.56	-0.8
3,733,658	-		PP_3300	0.56	-0.0
3,733,664	+		PP_3300	0.57	-0.1
3,733,665	-		PP_3300	0.57	-0.6
3,733,719	+		PP_3300	0.66	-0.6
3,733,719	+		PP_3300	0.66	-1.0
3,733,719	+		PP_3300	0.66	-0.7
3,733,720	-		PP_3300	0.66	+0.6
3,733,725	+		PP_3300	0.67	+0.9
3,733,725	+		PP_3300	0.67	+0.1
3,733,726	-		PP_3300	0.67	-0.0
3,733,726	-		PP_3300	0.67	-0.3
3,733,726	-		PP_3300	0.67	-0.3
3,733,831	+		PP_3300	0.84	-0.3
3,733,832	-		PP_3300	0.85	+0.4
3,733,835	+		PP_3300	0.85	-0.7
3,733,835	+		PP_3300	0.85	-0.1
3,733,836	-		PP_3300	0.85	-0.7
3,733,836	-		PP_3300	0.85	+0.7
3,733,836	-		PP_3300	0.85	-0.4
3,733,924	+				+0.5
3,733,925	-				-0.7
3,733,977	+				+0.2
3,733,978	-				+0.9
3,733,978	-				+0.4
3,733,979	+				-0.3
3,734,026	+				-0.3
3,734,038	+				+1.1
3,734,039	-				+0.1
3,734,125	+		PP_3301	0.11	-0.2
3,734,126	-		PP_3301	0.11	-0.5
3,734,165	-		PP_3301	0.15	-0.8