Strain Fitness in Pseudomonas putida KT2440 around PP_1860

Experiment: pinene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 10 vol%
2,081,081	-				-0.9
2,081,206	+				-0.4
2,081,230	-				-3.1
2,081,604	-				-4.1
2,081,638	+				-3.9
2,081,638	+				-2.0
2,081,638	+				-2.3
2,081,638	+				-1.5
2,081,760	+				-3.2
2,081,761	-				-0.0
2,081,916	+		PP_1860	0.33	-1.1
2,081,916	+		PP_1860	0.33	-1.4
2,081,917	-		PP_1860	0.33	+0.6
2,081,917	-		PP_1860	0.33	-0.0
2,081,925	+		PP_1860	0.35	-2.2
2,082,082	+		PP_1860	0.69	+1.1
2,082,082	+		PP_1860	0.69	+1.0
2,082,083	-		PP_1860	0.70	+1.7
2,082,124	+		PP_1860	0.79	+1.6
2,082,125	-		PP_1860	0.79	+2.2
2,082,281	+				+1.7
2,082,282	-				-1.4
2,082,394	+		PP_1861	0.12	+1.8
2,082,401	+		PP_1861	0.13	-0.1
2,082,473	+		PP_1861	0.20	+0.5
2,082,474	-		PP_1861	0.20	-0.9
2,082,505	+		PP_1861	0.24	+1.1
2,082,505	+		PP_1861	0.24	+0.2
2,082,505	+		PP_1861	0.24	-0.1
2,082,506	-		PP_1861	0.24	-2.6
2,082,506	-		PP_1861	0.24	-0.2
2,082,506	-		PP_1861	0.24	-1.0
2,082,506	-		PP_1861	0.24	-1.8
2,082,506	-		PP_1861	0.24	-2.5
2,082,507	+		PP_1861	0.24	+0.8
2,082,507	+		PP_1861	0.24	+1.1
2,082,705	-		PP_1861	0.45	-0.4
2,082,737	+		PP_1861	0.48	+0.7
2,082,737	+		PP_1861	0.48	+0.1
2,082,738	-		PP_1861	0.48	-0.6
2,082,738	-		PP_1861	0.48	-0.3
2,082,738	-		PP_1861	0.48	-0.8
2,083,210	+				+0.5