Strain Fitness in Pseudomonas putida KT2440 around PP_1174

Experiment: pinene 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 10 vol%
1,348,407	+		PP_1173	0.90	+0.1
1,348,535	+				+2.8
1,348,536	-				-0.6
1,348,607	+				-0.0
1,348,608	-				-0.5
1,348,611	+				-0.6
1,348,661	+				+0.2
1,348,661	+				-0.8
1,348,661	+				-0.5
1,348,661	+				+0.2
1,348,662	-				+0.1
1,348,796	-				+0.5
1,348,798	+				+1.5
1,348,830	+				-0.1
1,348,830	+				+0.5
1,348,838	+				-0.1
1,348,838	+				-1.9
1,348,839	-				-0.3
1,348,839	-				+0.3
1,348,839	-				+0.1
1,348,841	+				+0.5
1,348,841	+				+0.4
1,348,841	+				+0.2
1,348,842	-				+0.5
1,348,842	-				+0.8
1,348,842	-				-0.2
1,348,842	-				-0.8
1,348,842	-				-0.8
1,348,842	-				+2.5
1,348,894	+				+0.3
1,348,903	-				+0.4
1,348,903	-				-0.4
1,348,905	+				+0.8
1,348,905	+				+0.9
1,348,906	-				+0.5
1,348,927	+				+1.5
1,348,993	-				-0.6
1,348,993	-				-1.2
1,349,039	-				+0.9
1,349,201	+				+0.6
1,349,202	-				+0.1
1,349,202	-				-0.1
1,349,202	-				-1.1
1,349,202	-				+0.8
1,349,224	-				+0.0
1,349,320	-		PP_1174	0.24	-1.0
1,349,320	-		PP_1174	0.24	+1.3
1,349,326	+		PP_1174	0.28	+1.1
1,349,326	+		PP_1174	0.28	+1.3
1,349,326	+		PP_1174	0.28	-0.1
1,349,326	+		PP_1174	0.28	-0.3
1,349,327	-		PP_1174	0.29	+0.5
1,349,327	-		PP_1174	0.29	+0.1
1,349,327	-		PP_1174	0.29	-0.1
1,349,327	-		PP_1174	0.29	-0.5
1,349,327	-		PP_1174	0.29	-0.2
1,349,327	-		PP_1174	0.29	-0.5
1,349,327	-		PP_1174	0.29	+0.1
1,349,328	+		PP_1174	0.30	-1.1
1,349,329	-		PP_1174	0.30	-0.5
1,349,329	-		PP_1174	0.30	+0.5
1,349,329	-		PP_1174	0.30	+0.7
1,349,374	-		PP_1174	0.64	+0.1
1,349,545	-				-0.5
1,349,568	-				+0.8
1,349,599	+				-0.1
1,349,709	+				+2.3
1,349,710	-				-0.1
1,349,710	-				+1.2
1,349,774	+				-0.6
1,349,774	+				-0.1
1,349,803	+				+0.1
1,349,804	-				+0.1
1,349,910	-				-0.2
1,349,910	-				-1.0
1,349,911	+				-0.3
1,350,106	-				+0.3
1,350,106	-				-1.6
1,350,174	+				+0.5
1,350,277	+				+0.2
1,350,277	+				+0.5
1,350,278	-				-0.7
1,350,278	-				-0.5
1,350,321	+				-0.9
1,350,321	+				+1.3
1,350,321	+				-0.7
1,350,322	-				+0.9
1,350,322	-				-0.7
1,350,322	-				+0.2
1,350,322	-				-0.0
1,350,387	-				+0.3
1,350,400	+				+0.5
1,350,401	-				-0.0
1,350,401	-				-0.8
1,350,401	-				-0.6