Experiment: pinene 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0479 and PP_0480 are separated by 42 nucleotides PP_0480 and PP_0481 are separated by 172 nucleotides PP_0481 and PP_0482 are separated by 163 nucleotides PP_0482 and PP_0483 are separated by 72 nucleotides
PP_0479: PP_0479 - DNA-directed RNA polymerase subunit alpha, at 562,918 to 563,919
_0479
PP_0480: PP_0480 - 50S ribosomal protein L17, at 563,962 to 564,348
_0480
PP_0481: PP_0481 - Catalase, at 564,521 to 565,960
_0481
PP_0482: PP_0482 - bacterioferritin, at 566,124 to 566,588
_0482
PP_0483: PP_0483 - excinuclease (uvrABC system protein A), at 566,661 to 569,495
_0483
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 564.469 kb on + strand at 564.469 kb on + strand at 564.478 kb on + strand at 564.478 kb on + strand at 564.559 kb on - strand at 564.699 kb on - strand, within PP_0481 at 564.699 kb on - strand, within PP_0481 at 564.703 kb on + strand, within PP_0481 at 564.703 kb on + strand, within PP_0481 at 564.704 kb on - strand, within PP_0481 at 564.724 kb on + strand, within PP_0481 at 564.736 kb on + strand, within PP_0481 at 564.736 kb on + strand, within PP_0481 at 564.787 kb on - strand, within PP_0481 at 564.787 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.864 kb on - strand, within PP_0481 at 564.910 kb on - strand, within PP_0481 at 564.910 kb on - strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.931 kb on + strand, within PP_0481 at 564.932 kb on - strand, within PP_0481 at 564.946 kb on + strand, within PP_0481 at 564.947 kb on - strand, within PP_0481 at 565.112 kb on + strand, within PP_0481 at 565.112 kb on + strand, within PP_0481 at 565.112 kb on + strand, within PP_0481 at 565.112 kb on + strand, within PP_0481 at 565.113 kb on - strand, within PP_0481 at 565.113 kb on - strand, within PP_0481 at 565.220 kb on - strand, within PP_0481 at 565.232 kb on + strand, within PP_0481 at 565.427 kb on + strand, within PP_0481 at 565.468 kb on + strand, within PP_0481 at 565.468 kb on + strand, within PP_0481 at 565.469 kb on - strand, within PP_0481 at 565.469 kb on - strand, within PP_0481 at 565.469 kb on - strand, within PP_0481 at 565.518 kb on + strand, within PP_0481 at 565.519 kb on - strand, within PP_0481 at 565.526 kb on + strand, within PP_0481 at 565.607 kb on + strand, within PP_0481 at 565.607 kb on + strand, within PP_0481 at 565.608 kb on - strand, within PP_0481 at 565.640 kb on + strand, within PP_0481 at 565.641 kb on - strand, within PP_0481 at 565.641 kb on - strand, within PP_0481 at 565.641 kb on - strand, within PP_0481 at 565.641 kb on - strand, within PP_0481 at 565.645 kb on + strand, within PP_0481 at 565.673 kb on + strand, within PP_0481 at 565.762 kb on + strand, within PP_0481 at 565.769 kb on + strand, within PP_0481 at 565.770 kb on - strand, within PP_0481 at 565.834 kb on + strand at 565.834 kb on + strand at 565.887 kb on + strand at 565.887 kb on + strand at 565.887 kb on + strand at 565.892 kb on + strand at 565.892 kb on + strand at 565.893 kb on - strand at 565.917 kb on - strand at 566.010 kb on + strand at 566.011 kb on - strand at 566.066 kb on - strand at 566.066 kb on - strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.087 kb on - strand at 566.095 kb on + strand at 566.095 kb on + strand at 566.096 kb on - strand at 566.143 kb on + strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.151 kb on + strand at 566.151 kb on + strand at 566.152 kb on - strand at 566.152 kb on - strand at 566.196 kb on + strand, within PP_0482 at 566.196 kb on + strand, within PP_0482 at 566.196 kb on + strand, within PP_0482 at 566.217 kb on + strand, within PP_0482 at 566.218 kb on - strand, within PP_0482 at 566.218 kb on - strand, within PP_0482 at 566.244 kb on + strand, within PP_0482 at 566.360 kb on + strand, within PP_0482 at 566.361 kb on - strand, within PP_0482 at 566.403 kb on + strand, within PP_0482 at 566.403 kb on + strand, within PP_0482 at 566.404 kb on - strand, within PP_0482 at 566.404 kb on - strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.517 kb on + strand, within PP_0482 at 566.518 kb on - strand, within PP_0482 at 566.518 kb on - strand, within PP_0482 at 566.586 kb on + strand at 566.586 kb on + strand at 566.586 kb on + strand at 566.586 kb on + strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.607 kb on + strand at 566.630 kb on - strand at 566.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 10 vol% remove 564,469 + +1.4 564,469 + +1.2 564,478 + +0.9 564,478 + +1.7 564,559 - +1.6 564,699 - PP_0481 0.12 +0.1 564,699 - PP_0481 0.12 +1.7 564,703 + PP_0481 0.13 +1.5 564,703 + PP_0481 0.13 +1.3 564,704 - PP_0481 0.13 +1.3 564,724 + PP_0481 0.14 +1.2 564,736 + PP_0481 0.15 +2.1 564,736 + PP_0481 0.15 +0.7 564,787 - PP_0481 0.18 +2.4 564,787 - PP_0481 0.18 +1.7 564,864 - PP_0481 0.24 +2.5 564,864 - PP_0481 0.24 +1.4 564,864 - PP_0481 0.24 +0.6 564,910 - PP_0481 0.27 +2.0 564,910 - PP_0481 0.27 +1.2 564,931 + PP_0481 0.28 +1.9 564,931 + PP_0481 0.28 +1.4 564,931 + PP_0481 0.28 +1.5 564,931 + PP_0481 0.28 +1.5 564,931 + PP_0481 0.28 +1.1 564,932 - PP_0481 0.29 +1.9 564,946 + PP_0481 0.30 +1.9 564,947 - PP_0481 0.30 +1.4 565,112 + PP_0481 0.41 +1.7 565,112 + PP_0481 0.41 +1.4 565,112 + PP_0481 0.41 +1.3 565,112 + PP_0481 0.41 +1.3 565,113 - PP_0481 0.41 +1.7 565,113 - PP_0481 0.41 +1.4 565,220 - PP_0481 0.49 +2.2 565,232 + PP_0481 0.49 +1.7 565,427 + PP_0481 0.63 +2.0 565,468 + PP_0481 0.66 +2.0 565,468 + PP_0481 0.66 +1.9 565,469 - PP_0481 0.66 +1.3 565,469 - PP_0481 0.66 +2.2 565,469 - PP_0481 0.66 +1.8 565,518 + PP_0481 0.69 +1.7 565,519 - PP_0481 0.69 +1.6 565,526 + PP_0481 0.70 +1.6 565,607 + PP_0481 0.75 +1.5 565,607 + PP_0481 0.75 +1.7 565,608 - PP_0481 0.75 +1.4 565,640 + PP_0481 0.78 +1.9 565,641 - PP_0481 0.78 +1.2 565,641 - PP_0481 0.78 +1.5 565,641 - PP_0481 0.78 +1.2 565,641 - PP_0481 0.78 +1.5 565,645 + PP_0481 0.78 +2.4 565,673 + PP_0481 0.80 +1.3 565,762 + PP_0481 0.86 +1.0 565,769 + PP_0481 0.87 +1.4 565,770 - PP_0481 0.87 +1.1 565,834 + +1.4 565,834 + +3.6 565,887 + +1.0 565,887 + +1.6 565,887 + +1.2 565,892 + +0.9 565,892 + +0.0 565,893 - +1.3 565,917 - +1.9 566,010 + +0.4 566,011 - -0.2 566,066 - -1.0 566,066 - +0.6 566,086 + +0.2 566,086 + +0.4 566,086 + +0.1 566,086 + -0.6 566,087 - -0.3 566,095 + +0.3 566,095 + +0.0 566,096 - +0.6 566,143 + -0.0 566,144 - +0.4 566,144 - +1.4 566,144 - -0.7 566,144 - -0.4 566,151 + +0.2 566,151 + -0.3 566,152 - +0.7 566,152 - -0.4 566,196 + PP_0482 0.15 -0.0 566,196 + PP_0482 0.15 -0.7 566,196 + PP_0482 0.15 +0.8 566,217 + PP_0482 0.20 -1.4 566,218 - PP_0482 0.20 +0.2 566,218 - PP_0482 0.20 +0.3 566,244 + PP_0482 0.26 -1.1 566,360 + PP_0482 0.51 -1.0 566,361 - PP_0482 0.51 +0.1 566,403 + PP_0482 0.60 +0.4 566,403 + PP_0482 0.60 -0.8 566,404 - PP_0482 0.60 +0.3 566,404 - PP_0482 0.60 +0.3 566,460 + PP_0482 0.72 -3.1 566,460 + PP_0482 0.72 +0.7 566,460 + PP_0482 0.72 -0.8 566,460 + PP_0482 0.72 -0.1 566,460 + PP_0482 0.72 -0.6 566,461 - PP_0482 0.72 -0.2 566,461 - PP_0482 0.72 -0.1 566,461 - PP_0482 0.72 +0.2 566,517 + PP_0482 0.85 -0.4 566,518 - PP_0482 0.85 +0.3 566,518 - PP_0482 0.85 +0.6 566,586 + +1.5 566,586 + -0.3 566,586 + -0.3 566,586 + -0.2 566,587 - -0.2 566,587 - -0.3 566,587 - +0.3 566,587 - -0.6 566,587 - -0.2 566,587 - +1.2 566,607 + +0.7 566,630 - +0.3 566,659 - +0.7
Or see this region's nucleotide sequence