Strain Fitness in Escherichia coli BL21 around ECD_04336

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02068 and ECD_04336 are separated by 295 nucleotidesECD_04336 and ECD_02069 are separated by 372 nucleotides ECD_02068: ECD_02068 - putative outer membrane protein, at 2,122,227 to 2,123,591 _02068 ECD_04336: ECD_04336 - small membrane protein, at 2,123,887 to 2,123,970 _04336 ECD_02069: ECD_02069 - tRNA-dihydrouridine synthase C, at 2,124,343 to 2,125,290 _02069 Position (kb) 2123 2124Strain fitness (log2 ratio) -2 -1 0 1at 2122.983 kb on - strand, within ECD_02068at 2122.999 kb on - strand, within ECD_02068at 2123.298 kb on + strand, within ECD_02068at 2123.299 kb on - strand, within ECD_02068at 2123.451 kb on - strand, within ECD_02068at 2123.451 kb on - strand, within ECD_02068at 2123.479 kb on + strandat 2124.057 kb on - strandat 2124.489 kb on - strand, within ECD_02069at 2124.491 kb on - strand, within ECD_02069

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,122,983 - ECD_02068 0.55 -2.0
2,122,999 - ECD_02068 0.57 -0.8
2,123,298 + ECD_02068 0.78 -0.2
2,123,299 - ECD_02068 0.79 +0.1
2,123,451 - ECD_02068 0.90 -0.2
2,123,451 - ECD_02068 0.90 -1.4
2,123,479 + -1.1
2,124,057 - -0.4
2,124,489 - ECD_02069 0.15 -1.4
2,124,491 - ECD_02069 0.16 +0.0

Or see this region's nucleotide sequence