Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04120 and ECD_04121 are separated by 161 nucleotides ECD_04121 and ECD_04122 are separated by 45 nucleotides ECD_04122 and ECD_04123 are separated by 192 nucleotides
ECD_04120: ECD_04120 - ornithine carbamoyltransferase 1, at 4,388,804 to 4,389,808
_04120
ECD_04121: ECD_04121 - protein inhibitor of RNase E, at 4,389,970 to 4,390,386
_04121
ECD_04122: ECD_04122 - GNAT family putative N-acetyltransferase, at 4,390,432 to 4,390,935
_04122
ECD_04123: ECD_04123 - DUF898 family inner membrane protein, at 4,391,128 to 4,392,324
_04123
Position (kb) 4389
4390
4391 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4389.049 kb on - strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.111 kb on - strand, within ECD_04120 at 4389.120 kb on + strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.124 kb on + strand, within ECD_04120 at 4389.124 kb on + strand, within ECD_04120 at 4389.125 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.328 kb on - strand, within ECD_04120 at 4389.450 kb on + strand, within ECD_04120 at 4389.451 kb on - strand, within ECD_04120 at 4389.507 kb on + strand, within ECD_04120 at 4389.551 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.808 kb on + strand at 4389.808 kb on + strand at 4389.809 kb on - strand at 4389.809 kb on - strand at 4389.809 kb on - strand at 4389.956 kb on - strand at 4389.956 kb on - strand at 4389.956 kb on - strand at 4390.063 kb on + strand, within ECD_04121 at 4390.064 kb on - strand, within ECD_04121 at 4390.291 kb on + strand, within ECD_04121 at 4390.309 kb on + strand, within ECD_04121 at 4390.309 kb on + strand, within ECD_04121 at 4390.389 kb on - strand at 4390.397 kb on - strand at 4390.490 kb on + strand, within ECD_04122 at 4390.497 kb on + strand, within ECD_04122 at 4390.498 kb on - strand, within ECD_04122 at 4390.696 kb on + strand, within ECD_04122 at 4390.752 kb on - strand, within ECD_04122 at 4390.771 kb on - strand, within ECD_04122 at 4390.772 kb on + strand, within ECD_04122 at 4390.772 kb on + strand, within ECD_04122 at 4390.814 kb on + strand, within ECD_04122 at 4390.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 4,389,049 - ECD_04120 0.24 -0.2 4,389,110 + ECD_04120 0.30 -1.1 4,389,110 + ECD_04120 0.30 -1.7 4,389,110 + ECD_04120 0.30 -1.4 4,389,111 - ECD_04120 0.31 -0.7 4,389,120 + ECD_04120 0.31 -1.0 4,389,121 - ECD_04120 0.32 -0.2 4,389,121 - ECD_04120 0.32 +0.1 4,389,121 - ECD_04120 0.32 -0.1 4,389,121 - ECD_04120 0.32 -0.5 4,389,124 + ECD_04120 0.32 -1.3 4,389,124 + ECD_04120 0.32 -0.9 4,389,125 - ECD_04120 0.32 +0.1 4,389,153 - ECD_04120 0.35 +0.3 4,389,153 - ECD_04120 0.35 +0.4 4,389,153 - ECD_04120 0.35 -0.4 4,389,328 - ECD_04120 0.52 +0.1 4,389,450 + ECD_04120 0.64 -1.1 4,389,451 - ECD_04120 0.64 +0.3 4,389,507 + ECD_04120 0.70 -1.3 4,389,551 - ECD_04120 0.74 -0.3 4,389,583 - ECD_04120 0.78 +0.5 4,389,583 - ECD_04120 0.78 -0.3 4,389,583 - ECD_04120 0.78 -0.7 4,389,808 + -0.7 4,389,808 + -1.4 4,389,809 - -1.3 4,389,809 - -1.5 4,389,809 - -0.4 4,389,956 - -0.1 4,389,956 - +2.3 4,389,956 - -0.7 4,390,063 + ECD_04121 0.22 -0.3 4,390,064 - ECD_04121 0.23 -1.3 4,390,291 + ECD_04121 0.77 -0.5 4,390,309 + ECD_04121 0.81 -0.4 4,390,309 + ECD_04121 0.81 -0.1 4,390,389 - -1.6 4,390,397 - -1.3 4,390,490 + ECD_04122 0.12 -1.0 4,390,497 + ECD_04122 0.13 -1.3 4,390,498 - ECD_04122 0.13 -0.6 4,390,696 + ECD_04122 0.52 -1.9 4,390,752 - ECD_04122 0.63 +0.5 4,390,771 - ECD_04122 0.67 -0.3 4,390,772 + ECD_04122 0.67 -0.6 4,390,772 + ECD_04122 0.67 -1.9 4,390,814 + ECD_04122 0.76 -1.2 4,390,907 - -0.5
Or see this region's nucleotide sequence