Strain Fitness in Escherichia coli BL21 around ECD_03891

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03890 and ECD_03891 are separated by 199 nucleotidesECD_03891 and ECD_03892 are separated by 219 nucleotides ECD_03890: ECD_03890 - transcriptional repressor, at 4,130,175 to 4,130,999 _03890 ECD_03891: ECD_03891 - homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent, at 4,131,199 to 4,134,882 _03891 ECD_03892: ECD_03892 - putative Na+/Pi-cotransporter, at 4,135,102 to 4,136,733 _03892 Position (kb) 4131 4132 4133 4134 4135Strain fitness (log2 ratio) -2 -1 0 1at 4130.262 kb on - strand, within ECD_03890at 4130.444 kb on - strand, within ECD_03890at 4130.444 kb on - strand, within ECD_03890at 4130.444 kb on - strand, within ECD_03890at 4130.452 kb on - strand, within ECD_03890at 4130.452 kb on - strand, within ECD_03890at 4130.452 kb on - strand, within ECD_03890at 4130.452 kb on - strand, within ECD_03890at 4130.452 kb on - strand, within ECD_03890at 4130.514 kb on - strand, within ECD_03890at 4130.580 kb on - strand, within ECD_03890at 4130.580 kb on - strand, within ECD_03890at 4130.580 kb on - strand, within ECD_03890at 4130.580 kb on - strand, within ECD_03890at 4130.580 kb on - strand, within ECD_03890at 4130.587 kb on - strand, within ECD_03890at 4130.601 kb on - strand, within ECD_03890at 4130.637 kb on - strand, within ECD_03890at 4130.703 kb on - strand, within ECD_03890at 4131.053 kb on - strandat 4131.053 kb on - strandat 4131.060 kb on + strandat 4131.085 kb on + strandat 4131.086 kb on - strandat 4131.139 kb on + strandat 4131.140 kb on - strandat 4131.147 kb on + strandat 4131.244 kb on - strandat 4131.286 kb on + strandat 4131.409 kb on + strandat 4131.479 kb on - strandat 4131.622 kb on - strand, within ECD_03891at 4131.654 kb on + strand, within ECD_03891at 4131.657 kb on + strand, within ECD_03891at 4131.658 kb on - strand, within ECD_03891at 4131.825 kb on + strand, within ECD_03891at 4131.892 kb on + strand, within ECD_03891at 4131.892 kb on + strand, within ECD_03891at 4131.893 kb on - strand, within ECD_03891at 4131.893 kb on - strand, within ECD_03891at 4131.893 kb on - strand, within ECD_03891at 4131.967 kb on + strand, within ECD_03891at 4131.967 kb on + strand, within ECD_03891at 4132.000 kb on + strand, within ECD_03891at 4132.000 kb on + strand, within ECD_03891at 4132.000 kb on + strand, within ECD_03891at 4132.082 kb on + strand, within ECD_03891at 4132.083 kb on - strand, within ECD_03891at 4132.083 kb on - strand, within ECD_03891at 4132.149 kb on + strand, within ECD_03891at 4132.149 kb on + strand, within ECD_03891at 4132.150 kb on - strand, within ECD_03891at 4132.150 kb on - strand, within ECD_03891at 4132.150 kb on - strand, within ECD_03891at 4132.336 kb on + strand, within ECD_03891at 4132.492 kb on - strand, within ECD_03891at 4132.596 kb on + strand, within ECD_03891at 4132.643 kb on + strand, within ECD_03891at 4132.644 kb on - strand, within ECD_03891at 4132.752 kb on + strand, within ECD_03891at 4132.810 kb on + strand, within ECD_03891at 4132.810 kb on + strand, within ECD_03891at 4132.951 kb on + strand, within ECD_03891at 4132.952 kb on - strand, within ECD_03891at 4132.952 kb on - strand, within ECD_03891at 4132.954 kb on + strand, within ECD_03891at 4132.954 kb on + strand, within ECD_03891at 4132.954 kb on + strand, within ECD_03891at 4132.954 kb on + strand, within ECD_03891at 4132.955 kb on - strand, within ECD_03891at 4132.955 kb on - strand, within ECD_03891at 4133.012 kb on - strand, within ECD_03891at 4133.090 kb on + strand, within ECD_03891at 4133.090 kb on + strand, within ECD_03891at 4133.211 kb on + strand, within ECD_03891at 4133.212 kb on - strand, within ECD_03891at 4133.256 kb on + strand, within ECD_03891at 4133.514 kb on + strand, within ECD_03891at 4133.514 kb on + strand, within ECD_03891at 4133.515 kb on - strand, within ECD_03891at 4133.521 kb on + strand, within ECD_03891at 4133.521 kb on + strand, within ECD_03891at 4133.522 kb on - strand, within ECD_03891at 4133.616 kb on + strand, within ECD_03891at 4133.688 kb on - strand, within ECD_03891at 4133.747 kb on - strand, within ECD_03891at 4133.764 kb on + strand, within ECD_03891at 4133.764 kb on + strand, within ECD_03891at 4133.764 kb on + strand, within ECD_03891at 4133.764 kb on + strand, within ECD_03891at 4133.764 kb on + strand, within ECD_03891at 4133.764 kb on + strand, within ECD_03891at 4133.765 kb on - strand, within ECD_03891at 4133.857 kb on + strand, within ECD_03891at 4133.867 kb on + strand, within ECD_03891at 4133.868 kb on - strand, within ECD_03891at 4133.868 kb on - strand, within ECD_03891at 4133.871 kb on + strand, within ECD_03891at 4133.959 kb on + strand, within ECD_03891at 4133.959 kb on + strand, within ECD_03891at 4133.959 kb on + strand, within ECD_03891at 4133.959 kb on + strand, within ECD_03891at 4133.960 kb on - strand, within ECD_03891at 4134.024 kb on + strand, within ECD_03891at 4134.024 kb on + strand, within ECD_03891at 4134.028 kb on + strand, within ECD_03891at 4134.029 kb on - strand, within ECD_03891at 4134.051 kb on + strand, within ECD_03891at 4134.052 kb on - strand, within ECD_03891at 4134.076 kb on + strand, within ECD_03891at 4134.319 kb on + strand, within ECD_03891at 4134.320 kb on - strand, within ECD_03891at 4134.320 kb on - strand, within ECD_03891at 4134.367 kb on + strand, within ECD_03891at 4134.367 kb on + strand, within ECD_03891at 4134.368 kb on - strand, within ECD_03891at 4134.446 kb on - strand, within ECD_03891at 4134.502 kb on + strand, within ECD_03891at 4134.503 kb on - strand, within ECD_03891at 4134.539 kb on - strandat 4134.740 kb on - strandat 4134.763 kb on + strandat 4134.764 kb on - strandat 4134.766 kb on + strandat 4134.767 kb on - strandat 4134.767 kb on - strandat 4134.774 kb on - strandat 4134.805 kb on + strandat 4134.805 kb on + strandat 4134.817 kb on - strandat 4134.822 kb on + strandat 4134.869 kb on - strandat 4134.950 kb on + strandat 4134.950 kb on + strandat 4134.961 kb on + strandat 4134.961 kb on + strandat 4134.962 kb on - strandat 4134.963 kb on + strandat 4134.963 kb on + strandat 4135.019 kb on + strandat 4135.076 kb on + strandat 4135.076 kb on + strandat 4135.076 kb on + strandat 4135.077 kb on - strandat 4135.078 kb on + strandat 4135.078 kb on + strandat 4135.079 kb on - strandat 4135.079 kb on - strandat 4135.079 kb on - strandat 4135.284 kb on + strand, within ECD_03892at 4135.331 kb on + strand, within ECD_03892at 4135.413 kb on - strand, within ECD_03892at 4135.611 kb on + strand, within ECD_03892at 4135.836 kb on + strand, within ECD_03892

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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4,130,262 - ECD_03890 0.11 +0.9
4,130,444 - ECD_03890 0.33 +0.8
4,130,444 - ECD_03890 0.33 -0.0
4,130,444 - ECD_03890 0.33 +0.7
4,130,452 - ECD_03890 0.34 +0.3
4,130,452 - ECD_03890 0.34 +0.0
4,130,452 - ECD_03890 0.34 +0.1
4,130,452 - ECD_03890 0.34 -0.8
4,130,452 - ECD_03890 0.34 +0.4
4,130,514 - ECD_03890 0.41 -0.3
4,130,580 - ECD_03890 0.49 +0.2
4,130,580 - ECD_03890 0.49 +0.3
4,130,580 - ECD_03890 0.49 +0.4
4,130,580 - ECD_03890 0.49 +0.7
4,130,580 - ECD_03890 0.49 +0.5
4,130,587 - ECD_03890 0.50 +0.4
4,130,601 - ECD_03890 0.52 +0.0
4,130,637 - ECD_03890 0.56 +0.4
4,130,703 - ECD_03890 0.64 +0.1
4,131,053 - -0.5
4,131,053 - -0.0
4,131,060 + +0.0
4,131,085 + +0.1
4,131,086 - -0.6
4,131,139 + +0.2
4,131,140 - -0.8
4,131,147 + +0.1
4,131,244 - -1.8
4,131,286 + +0.1
4,131,409 + -0.3
4,131,479 - -0.8
4,131,622 - ECD_03891 0.11 -0.9
4,131,654 + ECD_03891 0.12 +0.0
4,131,657 + ECD_03891 0.12 +0.4
4,131,658 - ECD_03891 0.12 -0.4
4,131,825 + ECD_03891 0.17 -0.6
4,131,892 + ECD_03891 0.19 -0.1
4,131,892 + ECD_03891 0.19 -0.0
4,131,893 - ECD_03891 0.19 -0.0
4,131,893 - ECD_03891 0.19 -0.4
4,131,893 - ECD_03891 0.19 -1.2
4,131,967 + ECD_03891 0.21 +0.1
4,131,967 + ECD_03891 0.21 -0.4
4,132,000 + ECD_03891 0.22 -0.2
4,132,000 + ECD_03891 0.22 +0.1
4,132,000 + ECD_03891 0.22 -0.0
4,132,082 + ECD_03891 0.24 +0.1
4,132,083 - ECD_03891 0.24 -0.2
4,132,083 - ECD_03891 0.24 -0.4
4,132,149 + ECD_03891 0.26 +0.2
4,132,149 + ECD_03891 0.26 +0.6
4,132,150 - ECD_03891 0.26 -0.2
4,132,150 - ECD_03891 0.26 -0.0
4,132,150 - ECD_03891 0.26 -0.4
4,132,336 + ECD_03891 0.31 -0.1
4,132,492 - ECD_03891 0.35 -1.1
4,132,596 + ECD_03891 0.38 -1.5
4,132,643 + ECD_03891 0.39 +0.1
4,132,644 - ECD_03891 0.39 -0.6
4,132,752 + ECD_03891 0.42 -0.2
4,132,810 + ECD_03891 0.44 +0.4
4,132,810 + ECD_03891 0.44 +0.5
4,132,951 + ECD_03891 0.48 +0.3
4,132,952 - ECD_03891 0.48 +0.9
4,132,952 - ECD_03891 0.48 -0.5
4,132,954 + ECD_03891 0.48 +0.3
4,132,954 + ECD_03891 0.48 +0.1
4,132,954 + ECD_03891 0.48 -0.6
4,132,954 + ECD_03891 0.48 +0.4
4,132,955 - ECD_03891 0.48 +0.2
4,132,955 - ECD_03891 0.48 -0.1
4,133,012 - ECD_03891 0.49 +0.0
4,133,090 + ECD_03891 0.51 -0.4
4,133,090 + ECD_03891 0.51 +0.6
4,133,211 + ECD_03891 0.55 -0.6
4,133,212 - ECD_03891 0.55 -0.6
4,133,256 + ECD_03891 0.56 +0.5
4,133,514 + ECD_03891 0.63 -0.1
4,133,514 + ECD_03891 0.63 +0.2
4,133,515 - ECD_03891 0.63 -0.2
4,133,521 + ECD_03891 0.63 -0.3
4,133,521 + ECD_03891 0.63 +0.4
4,133,522 - ECD_03891 0.63 -1.7
4,133,616 + ECD_03891 0.66 +0.5
4,133,688 - ECD_03891 0.68 -1.1
4,133,747 - ECD_03891 0.69 +1.5
4,133,764 + ECD_03891 0.70 -0.1
4,133,764 + ECD_03891 0.70 -1.2
4,133,764 + ECD_03891 0.70 -0.0
4,133,764 + ECD_03891 0.70 -0.0
4,133,764 + ECD_03891 0.70 +1.7
4,133,764 + ECD_03891 0.70 -0.4
4,133,765 - ECD_03891 0.70 -1.0
4,133,857 + ECD_03891 0.72 +0.7
4,133,867 + ECD_03891 0.72 -1.1
4,133,868 - ECD_03891 0.72 -0.0
4,133,868 - ECD_03891 0.72 -0.0
4,133,871 + ECD_03891 0.73 -0.1
4,133,959 + ECD_03891 0.75 -0.2
4,133,959 + ECD_03891 0.75 +0.3
4,133,959 + ECD_03891 0.75 +0.3
4,133,959 + ECD_03891 0.75 +0.0
4,133,960 - ECD_03891 0.75 -0.5
4,134,024 + ECD_03891 0.77 +0.1
4,134,024 + ECD_03891 0.77 -0.0
4,134,028 + ECD_03891 0.77 -0.3
4,134,029 - ECD_03891 0.77 -0.9
4,134,051 + ECD_03891 0.77 +0.6
4,134,052 - ECD_03891 0.77 +0.2
4,134,076 + ECD_03891 0.78 +0.8
4,134,319 + ECD_03891 0.85 +0.4
4,134,320 - ECD_03891 0.85 -0.5
4,134,320 - ECD_03891 0.85 -1.1
4,134,367 + ECD_03891 0.86 +0.4
4,134,367 + ECD_03891 0.86 -0.4
4,134,368 - ECD_03891 0.86 -1.2
4,134,446 - ECD_03891 0.88 -1.1
4,134,502 + ECD_03891 0.90 -0.2
4,134,503 - ECD_03891 0.90 -0.5
4,134,539 - -0.4
4,134,740 - +0.3
4,134,763 + -0.2
4,134,764 - -0.3
4,134,766 + +0.2
4,134,767 - -0.1
4,134,767 - -0.2
4,134,774 - -0.0
4,134,805 + -0.0
4,134,805 + -0.4
4,134,817 - +0.3
4,134,822 + +0.3
4,134,869 - -0.1
4,134,950 + -0.3
4,134,950 + -0.2
4,134,961 + +0.2
4,134,961 + +0.2
4,134,962 - -0.3
4,134,963 + +0.3
4,134,963 + -0.4
4,135,019 + -0.2
4,135,076 + +0.3
4,135,076 + -0.0
4,135,076 + -0.4
4,135,077 - -0.3
4,135,078 + -0.7
4,135,078 + -0.3
4,135,079 - -1.6
4,135,079 - -0.1
4,135,079 - -0.7
4,135,284 + ECD_03892 0.11 -1.4
4,135,331 + ECD_03892 0.14 -0.1
4,135,413 - ECD_03892 0.19 +0.3
4,135,611 + ECD_03892 0.31 -0.3
4,135,836 + ECD_03892 0.45 -0.2

Or see this region's nucleotide sequence