Strain Fitness in Escherichia coli BL21 around ECD_03730

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03728 and ECD_03729 are separated by 78 nucleotidesECD_03729 and ECD_03730 are separated by 3 nucleotidesECD_03730 and ECD_03731 are separated by 2 nucleotidesECD_03731 and ECD_03732 are separated by 41 nucleotides ECD_03728: ECD_03728 - regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'-N-acetyltransferase; putative ABC1 family protein kinase, at 3,927,137 to 3,928,777 _03728 ECD_03729: ECD_03729 - TatABCE protein translocation system subunit, at 3,928,856 to 3,929,125 _03729 ECD_03730: ECD_03730 - TatABCE protein translocation system subunit, at 3,929,129 to 3,929,644 _03730 ECD_03731: ECD_03731 - TatABCE protein translocation system subunit, at 3,929,647 to 3,930,423 _03731 ECD_03732: ECD_03732 - quality control of Tat-exported FeS proteins; Mg-dependent cytoplasmic DNase, at 3,930,465 to 3,931,247 _03732 Position (kb) 3929 3930Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3928.805 kb on + strandat 3928.810 kb on + strandat 3928.810 kb on + strandat 3928.811 kb on - strandat 3928.811 kb on - strandat 3928.811 kb on - strandat 3928.812 kb on + strandat 3928.812 kb on + strandat 3928.813 kb on - strandat 3928.813 kb on - strandat 3928.838 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.855 kb on + strandat 3928.856 kb on - strandat 3928.856 kb on - strandat 3928.870 kb on + strandat 3928.870 kb on + strandat 3928.870 kb on + strandat 3928.881 kb on + strandat 3928.905 kb on + strand, within ECD_03729at 3929.110 kb on + strandat 3929.123 kb on + strandat 3929.124 kb on - strandat 3929.289 kb on + strand, within ECD_03730at 3929.382 kb on + strand, within ECD_03730at 3929.382 kb on + strand, within ECD_03730at 3929.383 kb on - strand, within ECD_03730at 3929.414 kb on + strand, within ECD_03730at 3929.414 kb on + strand, within ECD_03730at 3929.415 kb on - strand, within ECD_03730at 3929.577 kb on + strand, within ECD_03730at 3929.654 kb on + strandat 3929.752 kb on + strand, within ECD_03731at 3929.945 kb on - strand, within ECD_03731at 3929.945 kb on - strand, within ECD_03731at 3929.946 kb on + strand, within ECD_03731at 3929.947 kb on - strand, within ECD_03731at 3930.086 kb on + strand, within ECD_03731at 3930.195 kb on + strand, within ECD_03731at 3930.229 kb on + strand, within ECD_03731at 3930.313 kb on + strand, within ECD_03731at 3930.352 kb on + strandat 3930.352 kb on + strandat 3930.352 kb on + strandat 3930.452 kb on + strandat 3930.452 kb on + strandat 3930.459 kb on + strandat 3930.473 kb on + strandat 3930.551 kb on + strand, within ECD_03732at 3930.560 kb on - strand, within ECD_03732at 3930.575 kb on + strand, within ECD_03732at 3930.618 kb on + strand, within ECD_03732

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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3,928,805 + +0.9
3,928,810 + -0.1
3,928,810 + -0.6
3,928,811 - -1.4
3,928,811 - +0.2
3,928,811 - -0.8
3,928,812 + +0.7
3,928,812 + -0.2
3,928,813 - -1.4
3,928,813 - -2.8
3,928,838 + -0.1
3,928,855 + -1.7
3,928,855 + -0.1
3,928,855 + -1.1
3,928,855 + -0.2
3,928,855 + -0.6
3,928,855 + -0.5
3,928,855 + -1.3
3,928,856 - -3.0
3,928,856 - -2.3
3,928,870 + -1.0
3,928,870 + -1.4
3,928,870 + -1.2
3,928,881 + -2.1
3,928,905 + ECD_03729 0.18 -0.4
3,929,110 + +0.2
3,929,123 + -1.5
3,929,124 - -2.5
3,929,289 + ECD_03730 0.31 -1.1
3,929,382 + ECD_03730 0.49 -2.1
3,929,382 + ECD_03730 0.49 -1.6
3,929,383 - ECD_03730 0.49 -2.8
3,929,414 + ECD_03730 0.55 -0.4
3,929,414 + ECD_03730 0.55 -0.3
3,929,415 - ECD_03730 0.55 -0.7
3,929,577 + ECD_03730 0.87 -0.9
3,929,654 + -3.0
3,929,752 + ECD_03731 0.14 -3.0
3,929,945 - ECD_03731 0.38 -2.4
3,929,945 - ECD_03731 0.38 -2.7
3,929,946 + ECD_03731 0.38 -2.6
3,929,947 - ECD_03731 0.39 -1.5
3,930,086 + ECD_03731 0.56 -4.2
3,930,195 + ECD_03731 0.71 -2.8
3,930,229 + ECD_03731 0.75 -2.8
3,930,313 + ECD_03731 0.86 -1.8
3,930,352 + +0.5
3,930,352 + +0.2
3,930,352 + +0.7
3,930,452 + -0.1
3,930,452 + -0.4
3,930,459 + -0.7
3,930,473 + -0.6
3,930,551 + ECD_03732 0.11 -0.3
3,930,560 - ECD_03732 0.12 -0.6
3,930,575 + ECD_03732 0.14 -0.0
3,930,618 + ECD_03732 0.20 -0.3

Or see this region's nucleotide sequence