Strain Fitness in Escherichia coli BL21 around ECD_03593

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Bdellovibrio bacteriovorus HD100_10
3,778,093	+		ECD_03592	0.40	-0.9
3,778,093	+		ECD_03592	0.40	-0.2
3,778,093	+		ECD_03592	0.40	-0.1
3,778,094	-		ECD_03592	0.40	-1.8
3,778,094	-		ECD_03592	0.40	-1.6
3,778,094	-		ECD_03592	0.40	-2.2
3,778,094	-		ECD_03592	0.40	-1.0
3,778,094	-		ECD_03592	0.40	-0.5
3,778,096	-		ECD_03592	0.40	-0.9
3,778,117	-		ECD_03592	0.42	-0.9
3,778,117	-		ECD_03592	0.42	-0.8
3,778,165	+		ECD_03592	0.45	-0.9
3,778,166	-		ECD_03592	0.45	-0.4
3,778,184	-		ECD_03592	0.46	-0.7
3,778,200	-		ECD_03592	0.48	-2.4
3,778,258	+		ECD_03592	0.52	-0.2
3,778,258	+		ECD_03592	0.52	-1.0
3,778,258	+		ECD_03592	0.52	-0.1
3,778,303	+		ECD_03592	0.55	+0.4
3,778,312	-		ECD_03592	0.56	-1.4
3,778,312	-		ECD_03592	0.56	-1.9
3,778,396	+		ECD_03592	0.61	+0.1
3,778,396	+		ECD_03592	0.61	-0.5
3,778,397	-		ECD_03592	0.62	-1.2
3,778,397	-		ECD_03592	0.62	-1.5
3,778,444	+		ECD_03592	0.65	-0.6
3,778,445	-		ECD_03592	0.65	+0.6
3,778,445	-		ECD_03592	0.65	-0.8
3,778,492	+		ECD_03592	0.68	-0.2
3,778,493	-		ECD_03592	0.68	-0.8
3,778,493	-		ECD_03592	0.68	-1.0
3,778,522	+		ECD_03592	0.70	-0.6
3,778,523	-		ECD_03592	0.70	-0.4
3,778,539	-		ECD_03592	0.72	-1.0
3,778,539	-		ECD_03592	0.72	-1.0
3,778,539	-		ECD_03592	0.72	-0.2
3,778,543	+		ECD_03592	0.72	+0.0
3,778,544	-		ECD_03592	0.72	-1.3
3,778,544	-		ECD_03592	0.72	-0.3
3,778,544	-		ECD_03592	0.72	-0.8
3,778,621	-		ECD_03592	0.77	-1.1
3,778,682	-		ECD_03592	0.82	+0.3
3,778,684	-		ECD_03592	0.82	-0.2
3,778,805	-				-0.1
3,778,806	+				-0.1
3,778,806	+				-0.9
3,778,806	+				-1.3
3,778,819	-				-0.5
3,778,870	-				-0.4
3,778,891	+				+0.1
3,778,891	+				-0.6
3,778,943	+				-1.0
3,778,960	+				-0.6
3,778,961	-				-0.1
3,778,962	+				-0.5
3,778,963	-				-1.0
3,779,085	-				-0.4
3,779,085	-				-0.7
3,779,085	-				-0.8
3,779,097	-				-0.6
3,779,110	-				-1.9
3,779,110	-				-1.8
3,779,120	+				-0.3
3,779,326	-		ECD_03593	0.24	-0.0
3,779,335	+		ECD_03593	0.24	-0.7
3,779,335	+		ECD_03593	0.24	-1.4
3,779,335	+		ECD_03593	0.24	-1.4
3,779,335	+		ECD_03593	0.24	-0.9
3,779,336	-		ECD_03593	0.24	-0.9
3,779,336	-		ECD_03593	0.24	-1.2
3,779,336	-		ECD_03593	0.24	-2.1
3,779,336	-		ECD_03593	0.24	-1.2
3,779,341	+		ECD_03593	0.25	-1.1
3,779,341	+		ECD_03593	0.25	-0.5
3,779,343	+		ECD_03593	0.25	-0.8
3,779,343	+		ECD_03593	0.25	-1.1
3,779,343	+		ECD_03593	0.25	-1.1
3,779,343	+		ECD_03593	0.25	-1.3
3,779,344	-		ECD_03593	0.25	-2.1
3,779,404	-		ECD_03593	0.30	-0.4
3,779,412	+		ECD_03593	0.30	-0.5
3,779,413	-		ECD_03593	0.31	-1.3
3,779,413	-		ECD_03593	0.31	-1.3
3,779,413	-		ECD_03593	0.31	-1.5
3,779,484	+		ECD_03593	0.36	-0.8
3,779,557	+		ECD_03593	0.42	-1.6
3,779,603	-		ECD_03593	0.46	-0.9
3,779,603	-		ECD_03593	0.46	-1.0
3,779,603	-		ECD_03593	0.46	-1.1
3,779,611	+		ECD_03593	0.46	+0.1
3,779,611	+		ECD_03593	0.46	-1.2
3,779,614	-		ECD_03593	0.47	-0.1
3,779,614	-		ECD_03593	0.47	-0.9
3,779,614	-		ECD_03593	0.47	-0.7
3,779,703	+		ECD_03593	0.54	-0.5
3,779,704	-		ECD_03593	0.54	-0.4
3,779,704	-		ECD_03593	0.54	-0.3
3,779,723	+		ECD_03593	0.55	-0.2
3,779,752	+		ECD_03593	0.58	-0.5
3,779,753	-		ECD_03593	0.58	-1.1
3,779,753	-		ECD_03593	0.58	-0.8
3,779,767	+		ECD_03593	0.59	-0.6
3,779,768	-		ECD_03593	0.59	-0.8
3,779,784	+		ECD_03593	0.60	-0.9
3,779,905	-		ECD_03593	0.70	-1.6
3,779,909	+		ECD_03593	0.70	-0.4
3,779,909	+		ECD_03593	0.70	-0.2
3,779,909	+		ECD_03593	0.70	-0.6
3,779,909	+		ECD_03593	0.70	-0.8
3,779,910	-		ECD_03593	0.70	-0.4
3,779,910	-		ECD_03593	0.70	-0.5
3,779,910	-		ECD_03593	0.70	-0.8
3,779,910	-		ECD_03593	0.70	+0.0
3,779,910	-		ECD_03593	0.70	-0.4
3,779,910	-		ECD_03593	0.70	-1.4
3,779,910	-		ECD_03593	0.70	-0.5
3,779,957	-		ECD_03593	0.74	-0.3
3,779,973	+		ECD_03593	0.75	-1.2
3,779,974	-		ECD_03593	0.75	-0.8
3,779,983	-		ECD_03593	0.76	-0.8
3,780,044	-		ECD_03593	0.81	-0.9
3,780,044	-		ECD_03593	0.81	-0.8
3,780,070	+		ECD_03593	0.83	-0.4
3,780,117	+		ECD_03593	0.87	-0.7
3,780,118	-		ECD_03593	0.87	-0.8
3,780,219	+				-0.5
3,780,220	-				-0.3
3,780,268	-				-0.3
3,780,268	-				-0.4
3,780,332	+				-1.6
3,780,332	+				-0.9
3,780,332	+				-2.1
3,780,333	-				-0.5
3,780,333	-				-0.3
3,780,372	+				-1.1
3,780,372	+				-0.4
3,780,373	-				+0.1
3,780,373	-				+0.2
3,780,373	-				-0.2
3,780,373	-				+0.2
3,780,389	+				-1.7
3,780,389	+				-0.5
3,780,389	+				-0.9
3,780,389	+				-0.3
3,780,390	-				-0.1
3,780,390	-				-0.7
3,780,406	-				-0.6
3,780,431	+				-0.6
3,780,431	+				-0.8
3,780,431	+				-0.3
3,780,432	-				-0.1
3,780,448	+				-0.4
3,780,449	-				-0.3
3,780,449	-				-0.9
3,780,449	-				-0.4
3,780,470	+				+2.7
3,780,470	+				+0.1
3,780,470	+				-0.7
3,780,470	+				-1.4
3,780,470	+				+0.1
3,780,470	+				+1.7
3,780,471	-				-0.1
3,780,471	-				-0.1
3,780,471	-				-0.1
3,780,474	+				-0.5
3,780,474	+				+1.0
3,780,475	-				+0.3
3,780,475	-				-0.4
3,780,475	-				-0.3
3,780,487	+				-0.6
3,780,533	+		ECD_03594	0.10	+0.7
3,780,548	-		ECD_03594	0.12	-0.4
3,780,549	+		ECD_03594	0.12	+0.6
3,780,550	-		ECD_03594	0.12	-0.1
3,780,578	-		ECD_03594	0.14	-0.4
3,780,578	-		ECD_03594	0.14	-0.5
3,780,644	+		ECD_03594	0.20	-0.8
3,780,644	+		ECD_03594	0.20	-0.6
3,780,644	+		ECD_03594	0.20	-0.3
3,780,644	+		ECD_03594	0.20	+0.0
3,780,644	+		ECD_03594	0.20	-0.4
3,780,645	-		ECD_03594	0.20	+0.2
3,780,645	-		ECD_03594	0.20	+0.2
3,780,689	-		ECD_03594	0.24	-0.2
3,780,689	-		ECD_03594	0.24	+0.7
3,780,710	-		ECD_03594	0.25	-0.3
3,780,735	+		ECD_03594	0.28	-0.9
3,780,735	+		ECD_03594	0.28	-0.5
3,780,735	+		ECD_03594	0.28	+0.1
3,780,735	+		ECD_03594	0.28	-0.0
3,780,736	-		ECD_03594	0.28	-0.5
3,780,736	-		ECD_03594	0.28	-0.3
3,780,736	-		ECD_03594	0.28	-0.4
3,780,736	-		ECD_03594	0.28	-0.3
3,780,736	-		ECD_03594	0.28	-0.2
3,780,736	-		ECD_03594	0.28	+0.1
3,780,736	-		ECD_03594	0.28	-0.3
3,780,802	+		ECD_03594	0.33	+0.6
3,780,803	-		ECD_03594	0.33	+0.1
3,780,813	-		ECD_03594	0.34	-1.0
3,780,813	-		ECD_03594	0.34	-0.9
3,780,815	+		ECD_03594	0.34	-0.2
3,780,815	+		ECD_03594	0.34	-0.7
3,780,816	-		ECD_03594	0.34	-1.0
3,780,835	+		ECD_03594	0.36	-0.5
3,780,860	+		ECD_03594	0.38	-0.6
3,780,861	-		ECD_03594	0.38	-0.4
3,780,861	-		ECD_03594	0.38	+0.1
3,780,867	-		ECD_03594	0.39	-0.8
3,780,939	-		ECD_03594	0.45	-0.9
3,780,995	+		ECD_03594	0.50	-0.2
3,781,038	-		ECD_03594	0.53	-0.6
3,781,080	-		ECD_03594	0.57	-2.6
3,781,080	-		ECD_03594	0.57	-0.2
3,781,128	+		ECD_03594	0.61	-0.2
3,781,214	+		ECD_03594	0.68	-0.6
3,781,215	-		ECD_03594	0.68	-0.2
3,781,241	-		ECD_03594	0.71	+0.5
3,781,241	-		ECD_03594	0.71	-0.4