Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02916 and ECD_02917 are separated by 15 nucleotides ECD_02917 and ECD_02918 are separated by 1 nucleotides ECD_02918 and ECD_02919 are separated by 42 nucleotides ECD_02919 and ECD_02920 are separated by 268 nucleotides
ECD_02916: ECD_02916 - putative outer membrane usher protein, at 3,053,498 to 3,055,966
_02916
ECD_02917: ECD_02917 - putative periplasmic pilin chaperone, at 3,055,982 to 3,056,731
_02917
ECD_02918: ECD_02918 - fimbrial protein, at 3,056,733 to 3,057,797
_02918
ECD_02919: ECD_02919 - motility and biofilm regulator, at 3,057,840 to 3,058,040
_02919
ECD_02920: ECD_02920 - DUF1449 family inner membrane protein, at 3,058,309 to 3,058,938
_02920
Position (kb)
3056
3057
3058 Strain fitness (log2 ratio)
-2
-1
0
1 at 3055.780 kb on - strand at 3055.835 kb on + strand at 3056.523 kb on - strand, within ECD_02917 at 3057.038 kb on + strand, within ECD_02918 at 3057.088 kb on + strand, within ECD_02918 at 3057.119 kb on - strand, within ECD_02918 at 3057.773 kb on - strand at 3057.795 kb on + strand at 3057.795 kb on + strand at 3057.806 kb on - strand at 3057.814 kb on + strand at 3057.838 kb on + strand at 3057.917 kb on + strand, within ECD_02919 at 3058.014 kb on - strand, within ECD_02919 at 3058.140 kb on - strand at 3058.144 kb on - strand at 3058.453 kb on - strand, within ECD_02920 at 3058.632 kb on - strand, within ECD_02920 at 3058.657 kb on + strand, within ECD_02920 at 3058.723 kb on + strand, within ECD_02920 at 3058.725 kb on + strand, within ECD_02920
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 3,055,780 - -0.0 3,055,835 + -1.1 3,056,523 - ECD_02917 0.72 -1.5 3,057,038 + ECD_02918 0.29 -1.2 3,057,088 + ECD_02918 0.33 -1.3 3,057,119 - ECD_02918 0.36 -1.7 3,057,773 - -1.7 3,057,795 + -0.5 3,057,795 + -0.2 3,057,806 - -2.0 3,057,814 + -1.1 3,057,838 + -1.2 3,057,917 + ECD_02919 0.38 -2.1 3,058,014 - ECD_02919 0.87 -1.1 3,058,140 - -1.0 3,058,144 - -0.8 3,058,453 - ECD_02920 0.23 -1.4 3,058,632 - ECD_02920 0.51 -0.9 3,058,657 + ECD_02920 0.55 -0.3 3,058,723 + ECD_02920 0.66 -0.4 3,058,725 + ECD_02920 0.66 -2.1
Or see this region's nucleotide sequence