Strain Fitness in Escherichia coli BL21 around ECD_02781

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02780 and ECD_02781 are separated by 17 nucleotidesECD_02781 and ECD_02782 are separated by 17 nucleotidesECD_02782 and ECD_02783 overlap by 4 nucleotidesECD_02783 and ECD_02784 are separated by 7 nucleotides ECD_02780: ECD_02780 - putative PilT family AAA+ ATPase, at 2,924,958 to 2,925,938 _02780 ECD_02781: ECD_02781 - UPF0001 family protein, PLP-binding, at 2,925,956 to 2,926,660 _02781 ECD_02782: ECD_02782 - putative inner membrane protein; compensates for loss in K+ uptake, at 2,926,678 to 2,927,244 _02782 ECD_02783: ECD_02783 - UPF0235 family protein, at 2,927,241 to 2,927,531 _02783 ECD_02784: ECD_02784 - dITP/XTP pyrophosphatase, at 2,927,539 to 2,928,132 _02784 Position (kb) 2925 2926 2927Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2924.990 kb on - strandat 2925.033 kb on - strandat 2925.260 kb on + strand, within ECD_02780at 2925.261 kb on - strand, within ECD_02780at 2925.264 kb on + strand, within ECD_02780at 2925.401 kb on + strand, within ECD_02780at 2925.402 kb on - strand, within ECD_02780at 2925.402 kb on - strand, within ECD_02780at 2925.402 kb on - strand, within ECD_02780at 2925.451 kb on + strand, within ECD_02780at 2925.458 kb on - strand, within ECD_02780at 2925.458 kb on - strand, within ECD_02780at 2925.511 kb on + strand, within ECD_02780at 2925.651 kb on + strand, within ECD_02780at 2925.762 kb on + strand, within ECD_02780at 2925.798 kb on + strand, within ECD_02780at 2925.798 kb on + strand, within ECD_02780at 2925.885 kb on + strandat 2925.886 kb on - strandat 2925.899 kb on + strandat 2925.899 kb on + strandat 2925.900 kb on - strandat 2925.907 kb on - strandat 2925.912 kb on - strandat 2925.933 kb on - strandat 2925.933 kb on - strandat 2925.933 kb on - strandat 2925.938 kb on + strandat 2925.939 kb on - strandat 2925.942 kb on - strandat 2926.148 kb on - strand, within ECD_02781at 2926.186 kb on - strand, within ECD_02781at 2926.217 kb on - strand, within ECD_02781at 2926.219 kb on + strand, within ECD_02781at 2926.258 kb on + strand, within ECD_02781at 2926.258 kb on + strand, within ECD_02781at 2926.363 kb on + strand, within ECD_02781at 2926.419 kb on + strand, within ECD_02781at 2926.472 kb on + strand, within ECD_02781at 2926.472 kb on + strand, within ECD_02781at 2926.472 kb on + strand, within ECD_02781at 2926.473 kb on - strand, within ECD_02781at 2926.473 kb on - strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.477 kb on - strand, within ECD_02781at 2926.509 kb on + strand, within ECD_02781at 2926.600 kb on + strandat 2926.722 kb on + strandat 2926.885 kb on + strand, within ECD_02782at 2927.286 kb on + strand, within ECD_02783at 2927.286 kb on + strand, within ECD_02783at 2927.287 kb on - strand, within ECD_02783at 2927.288 kb on + strand, within ECD_02783at 2927.315 kb on + strand, within ECD_02783at 2927.315 kb on + strand, within ECD_02783at 2927.316 kb on - strand, within ECD_02783at 2927.326 kb on + strand, within ECD_02783at 2927.326 kb on + strand, within ECD_02783at 2927.525 kb on + strandat 2927.525 kb on + strandat 2927.529 kb on + strandat 2927.529 kb on + strandat 2927.533 kb on + strandat 2927.533 kb on + strandat 2927.538 kb on + strandat 2927.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,924,990 - -0.4
2,925,033 - +0.2
2,925,260 + ECD_02780 0.31 -2.2
2,925,261 - ECD_02780 0.31 +0.5
2,925,264 + ECD_02780 0.31 -0.5
2,925,401 + ECD_02780 0.45 +0.7
2,925,402 - ECD_02780 0.45 +0.1
2,925,402 - ECD_02780 0.45 +0.7
2,925,402 - ECD_02780 0.45 +1.1
2,925,451 + ECD_02780 0.50 -2.2
2,925,458 - ECD_02780 0.51 -0.5
2,925,458 - ECD_02780 0.51 +0.1
2,925,511 + ECD_02780 0.56 +0.2
2,925,651 + ECD_02780 0.71 -0.8
2,925,762 + ECD_02780 0.82 -3.1
2,925,798 + ECD_02780 0.86 -1.8
2,925,798 + ECD_02780 0.86 +0.1
2,925,885 + +0.2
2,925,886 - -0.1
2,925,899 + -0.1
2,925,899 + -0.6
2,925,900 - +0.5
2,925,907 - +1.5
2,925,912 - -0.4
2,925,933 - -0.2
2,925,933 - -1.0
2,925,933 - +0.0
2,925,938 + +0.3
2,925,939 - -1.0
2,925,942 - -1.2
2,926,148 - ECD_02781 0.27 -1.1
2,926,186 - ECD_02781 0.33 -1.7
2,926,217 - ECD_02781 0.37 -1.8
2,926,219 + ECD_02781 0.37 -0.8
2,926,258 + ECD_02781 0.43 -1.1
2,926,258 + ECD_02781 0.43 -0.1
2,926,363 + ECD_02781 0.58 -0.1
2,926,419 + ECD_02781 0.66 -1.1
2,926,472 + ECD_02781 0.73 +1.0
2,926,472 + ECD_02781 0.73 -0.1
2,926,472 + ECD_02781 0.73 -0.7
2,926,473 - ECD_02781 0.73 -2.0
2,926,473 - ECD_02781 0.73 -0.9
2,926,476 + ECD_02781 0.74 -0.2
2,926,476 + ECD_02781 0.74 -0.2
2,926,476 + ECD_02781 0.74 -0.1
2,926,476 + ECD_02781 0.74 -0.9
2,926,476 + ECD_02781 0.74 -0.4
2,926,476 + ECD_02781 0.74 -1.2
2,926,477 - ECD_02781 0.74 -1.7
2,926,509 + ECD_02781 0.78 -0.3
2,926,600 + -0.7
2,926,722 + -1.9
2,926,885 + ECD_02782 0.37 -3.6
2,927,286 + ECD_02783 0.15 -0.8
2,927,286 + ECD_02783 0.15 -0.6
2,927,287 - ECD_02783 0.16 -2.3
2,927,288 + ECD_02783 0.16 -0.1
2,927,315 + ECD_02783 0.25 +0.4
2,927,315 + ECD_02783 0.25 +0.5
2,927,316 - ECD_02783 0.26 -0.6
2,927,326 + ECD_02783 0.29 +1.8
2,927,326 + ECD_02783 0.29 -0.4
2,927,525 + -0.7
2,927,525 + +0.2
2,927,529 + -0.8
2,927,529 + -0.3
2,927,533 + +0.0
2,927,533 + -0.5
2,927,538 + -1.6
2,927,538 + -0.3

Or see this region's nucleotide sequence