Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02644 and ECD_02646 are separated by 256 nucleotides ECD_02646 and ECD_02647 overlap by 82 nucleotides ECD_02647 and ECD_02648 are separated by 627 nucleotides
ECD_02644: ECD_02644 - L-1,2-propanediol oxidoreductase, at 2,764,455 to 2,765,606
_02644
ECD_02646: ECD_02646 - IS1 protein InsB, at 2,765,863 to 2,766,366
_02646
ECD_02647: ECD_02647 - IS1 protein InsA, at 2,766,285 to 2,766,560
_02647
ECD_02648: ECD_02648 - L-fuculose phosphate aldolase, at 2,767,188 to 2,768,132
_02648
Position (kb)
2766
2767 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2765.294 kb on + strand, within ECD_02644 at 2765.295 kb on - strand, within ECD_02644 at 2765.295 kb on - strand, within ECD_02644 at 2765.301 kb on - strand, within ECD_02644 at 2765.301 kb on - strand, within ECD_02644 at 2765.359 kb on - strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.404 kb on - strand, within ECD_02644 at 2765.414 kb on - strand, within ECD_02644 at 2765.448 kb on - strand, within ECD_02644 at 2765.490 kb on - strand, within ECD_02644 at 2765.653 kb on + strand at 2765.654 kb on - strand at 2765.654 kb on - strand at 2765.676 kb on + strand at 2765.738 kb on - strand at 2765.824 kb on - strand at 2765.879 kb on - strand at 2766.674 kb on - strand at 2766.690 kb on - strand at 2766.690 kb on - strand at 2766.718 kb on + strand at 2766.718 kb on + strand at 2766.719 kb on - strand at 2766.719 kb on - strand at 2766.897 kb on - strand at 2766.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,765,294 + ECD_02644 0.73 -1.0 2,765,295 - ECD_02644 0.73 +0.1 2,765,295 - ECD_02644 0.73 +1.1 2,765,301 - ECD_02644 0.73 +1.1 2,765,301 - ECD_02644 0.73 -1.4 2,765,359 - ECD_02644 0.78 -0.4 2,765,384 + ECD_02644 0.81 -2.0 2,765,384 + ECD_02644 0.81 -0.9 2,765,384 + ECD_02644 0.81 -3.3 2,765,384 + ECD_02644 0.81 -3.3 2,765,385 - ECD_02644 0.81 -0.0 2,765,385 - ECD_02644 0.81 +0.8 2,765,385 - ECD_02644 0.81 -0.4 2,765,385 - ECD_02644 0.81 +0.2 2,765,385 - ECD_02644 0.81 +0.6 2,765,385 - ECD_02644 0.81 -0.6 2,765,404 - ECD_02644 0.82 -0.9 2,765,414 - ECD_02644 0.83 -0.7 2,765,448 - ECD_02644 0.86 -1.9 2,765,490 - ECD_02644 0.90 -0.4 2,765,653 + -1.5 2,765,654 - +0.6 2,765,654 - +0.3 2,765,676 + -2.1 2,765,738 - +0.3 2,765,824 - +0.2 2,765,879 - -0.6 2,766,674 - -0.0 2,766,690 - +0.1 2,766,690 - -0.3 2,766,718 + -0.6 2,766,718 + -3.0 2,766,719 - +0.7 2,766,719 - +0.8 2,766,897 - -1.4 2,766,897 - -0.3
Or see this region's nucleotide sequence