Strain Fitness in Escherichia coli BL21 around ECD_02480

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02479 and ECD_02480 are separated by 96 nucleotidesECD_02480 and ECD_02481 overlap by 4 nucleotides ECD_02479: ECD_02479 - phosphatidylserine synthase; CDP-diacylglycerol-serine O-phosphatidyltransferase, at 2,589,327 to 2,590,682 _02479 ECD_02480: ECD_02480 - putative lipoprotein, at 2,590,779 to 2,591,051 _02480 ECD_02481: ECD_02481 - alpha-ketoglutarate transporter, at 2,591,048 to 2,592,346 _02481 Position (kb) 2590 2591 2592Strain fitness (log2 ratio) -3 -2 -1 0 1at 2590.860 kb on + strand, within ECD_02480at 2591.195 kb on + strand, within ECD_02481at 2591.198 kb on - strand, within ECD_02481at 2591.215 kb on - strand, within ECD_02481at 2591.465 kb on - strand, within ECD_02481at 2591.551 kb on + strand, within ECD_02481at 2591.552 kb on - strand, within ECD_02481at 2591.902 kb on + strand, within ECD_02481at 2591.904 kb on + strand, within ECD_02481at 2591.904 kb on + strand, within ECD_02481at 2591.905 kb on - strand, within ECD_02481at 2591.905 kb on - strand, within ECD_02481at 2591.905 kb on - strand, within ECD_02481at 2591.969 kb on + strand, within ECD_02481at 2592.044 kb on - strand, within ECD_02481

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,590,860 + ECD_02480 0.30 -1.9
2,591,195 + ECD_02481 0.11 -2.8
2,591,198 - ECD_02481 0.12 -2.2
2,591,215 - ECD_02481 0.13 -0.5
2,591,465 - ECD_02481 0.32 -2.2
2,591,551 + ECD_02481 0.39 -1.5
2,591,552 - ECD_02481 0.39 +0.2
2,591,902 + ECD_02481 0.66 -1.4
2,591,904 + ECD_02481 0.66 -1.7
2,591,904 + ECD_02481 0.66 -3.4
2,591,905 - ECD_02481 0.66 +1.4
2,591,905 - ECD_02481 0.66 -2.0
2,591,905 - ECD_02481 0.66 -2.5
2,591,969 + ECD_02481 0.71 -2.7
2,592,044 - ECD_02481 0.77 -2.4

Or see this region's nucleotide sequence