Strain Fitness in Escherichia coli BL21 around ECD_02392

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02391 and ECD_02392 overlap by 1 nucleotidesECD_02392 and ECD_02393 are separated by 170 nucleotides ECD_02391: ECD_02391 - phosphoribosylaminoimidazole synthetase, at 2,485,678 to 2,486,715 _02391 ECD_02392: ECD_02392 - phosphoribosylglycinamide formyltransferase 1, at 2,486,715 to 2,487,353 _02392 ECD_02393: ECD_02393 - polyphosphate kinase, component of RNA degradosome, at 2,487,524 to 2,489,590 _02393 Position (kb) 2486 2487 2488Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2485.764 kb on - strandat 2486.122 kb on + strand, within ECD_02391at 2486.122 kb on + strand, within ECD_02391at 2486.122 kb on + strand, within ECD_02391at 2486.122 kb on + strand, within ECD_02391at 2486.123 kb on - strand, within ECD_02391at 2486.467 kb on - strand, within ECD_02391at 2486.593 kb on - strand, within ECD_02391at 2486.720 kb on + strandat 2486.765 kb on + strandat 2486.822 kb on + strand, within ECD_02392at 2486.913 kb on + strand, within ECD_02392at 2486.946 kb on + strand, within ECD_02392at 2486.946 kb on + strand, within ECD_02392at 2486.947 kb on - strand, within ECD_02392at 2486.979 kb on - strand, within ECD_02392at 2487.239 kb on + strand, within ECD_02392at 2487.244 kb on - strand, within ECD_02392at 2487.244 kb on - strand, within ECD_02392at 2487.336 kb on + strandat 2487.351 kb on + strandat 2487.503 kb on + strandat 2487.542 kb on + strandat 2487.648 kb on - strandat 2487.983 kb on + strand, within ECD_02393at 2487.983 kb on + strand, within ECD_02393at 2487.990 kb on - strand, within ECD_02393at 2488.227 kb on + strand, within ECD_02393

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
remove
2,485,764 - -2.6
2,486,122 + ECD_02391 0.43 -2.4
2,486,122 + ECD_02391 0.43 -0.8
2,486,122 + ECD_02391 0.43 -1.4
2,486,122 + ECD_02391 0.43 -2.6
2,486,123 - ECD_02391 0.43 -1.9
2,486,467 - ECD_02391 0.76 -1.9
2,486,593 - ECD_02391 0.88 -4.0
2,486,720 + +0.8
2,486,765 + -0.6
2,486,822 + ECD_02392 0.17 +0.5
2,486,913 + ECD_02392 0.31 +0.3
2,486,946 + ECD_02392 0.36 +0.1
2,486,946 + ECD_02392 0.36 -0.5
2,486,947 - ECD_02392 0.36 -1.6
2,486,979 - ECD_02392 0.41 -0.5
2,487,239 + ECD_02392 0.82 -0.0
2,487,244 - ECD_02392 0.83 -0.2
2,487,244 - ECD_02392 0.83 -0.2
2,487,336 + +0.9
2,487,351 + +0.2
2,487,503 + +1.0
2,487,542 + -1.3
2,487,648 - -0.8
2,487,983 + ECD_02393 0.22 -3.5
2,487,983 + ECD_02393 0.22 -1.6
2,487,990 - ECD_02393 0.23 -2.4
2,488,227 + ECD_02393 0.34 -1.3

Or see this region's nucleotide sequence