Strain Fitness in Escherichia coli BL21 around ECD_02352

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02350 and ECD_02351 overlap by 4 nucleotidesECD_02351 and ECD_02352 overlap by 26 nucleotidesECD_02352 and ECD_02353 are separated by 12 nucleotidesECD_02353 and ECD_02354 are separated by 292 nucleotides ECD_02350: ECD_02350 - cobalamin adenosyltransferase involved in ethanolamine utilization, at 2,437,985 to 2,438,794 _02350 ECD_02351: ECD_02351 - RmlC-like cupin domain protein, at 2,438,791 to 2,439,492 _02351 ECD_02352: ECD_02352 - putative P-loop NTPase ethanolamine utilization protein, at 2,439,467 to 2,439,946 _02352 ECD_02353: ECD_02353 - putative ethanol utilization carboxysome structural protein, at 2,439,959 to 2,440,294 _02353 ECD_02354: ECD_02354 - malic enzyme: putative oxidoreductase/phosphotransacetylase, at 2,440,587 to 2,442,866 _02354 Position (kb) 2439 2440Strain fitness (log2 ratio) -1 0 1at 2438.752 kb on + strandat 2438.766 kb on - strandat 2438.826 kb on - strandat 2438.826 kb on - strandat 2439.058 kb on + strand, within ECD_02351at 2439.059 kb on - strand, within ECD_02351at 2439.363 kb on + strand, within ECD_02351at 2439.406 kb on - strand, within ECD_02351at 2439.567 kb on - strand, within ECD_02352at 2439.567 kb on - strand, within ECD_02352at 2439.770 kb on - strand, within ECD_02352at 2439.774 kb on - strand, within ECD_02352at 2439.774 kb on - strand, within ECD_02352at 2439.784 kb on - strand, within ECD_02352at 2439.896 kb on + strand, within ECD_02352at 2440.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,438,752 + -1.0
2,438,766 - -0.3
2,438,826 - +0.1
2,438,826 - -0.4
2,439,058 + ECD_02351 0.38 -0.7
2,439,059 - ECD_02351 0.38 -1.0
2,439,363 + ECD_02351 0.81 -0.6
2,439,406 - ECD_02351 0.88 -0.5
2,439,567 - ECD_02352 0.21 -0.2
2,439,567 - ECD_02352 0.21 +0.6
2,439,770 - ECD_02352 0.63 +0.6
2,439,774 - ECD_02352 0.64 +0.0
2,439,774 - ECD_02352 0.64 +0.2
2,439,784 - ECD_02352 0.66 +0.4
2,439,896 + ECD_02352 0.89 -0.1
2,440,751 + -1.6

Or see this region's nucleotide sequence