Strain Fitness in Escherichia coli BL21 around ECD_02342

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02341 and ECD_02342 are separated by 11 nucleotidesECD_02342 and ECD_02343 overlap by 4 nucleotides ECD_02341: ECD_02341 - ethanolamine ammonia-lyase, large subunit, heavy chain, at 2,428,498 to 2,429,859 _02341 ECD_02342: ECD_02342 - reactivating factor for ethanolamine ammonia lyase, at 2,429,871 to 2,431,274 _02342 ECD_02343: ECD_02343 - ethanolamine transporter, at 2,431,271 to 2,432,497 _02343 Position (kb) 2429 2430 2431 2432Strain fitness (log2 ratio) -3 -2 -1 0 1at 2428.926 kb on - strand, within ECD_02341at 2428.930 kb on - strand, within ECD_02341at 2428.930 kb on - strand, within ECD_02341at 2428.930 kb on - strand, within ECD_02341at 2428.930 kb on - strand, within ECD_02341at 2428.946 kb on - strand, within ECD_02341at 2429.119 kb on - strand, within ECD_02341at 2429.231 kb on + strand, within ECD_02341at 2429.232 kb on - strand, within ECD_02341at 2429.328 kb on - strand, within ECD_02341at 2429.606 kb on + strand, within ECD_02341at 2429.825 kb on + strandat 2429.827 kb on + strandat 2429.827 kb on + strandat 2429.828 kb on - strandat 2429.828 kb on - strandat 2429.851 kb on + strandat 2429.859 kb on + strandat 2429.859 kb on + strandat 2429.933 kb on + strandat 2429.947 kb on + strandat 2430.001 kb on - strandat 2430.167 kb on - strand, within ECD_02342at 2430.279 kb on + strand, within ECD_02342at 2430.280 kb on - strand, within ECD_02342at 2430.372 kb on + strand, within ECD_02342at 2430.373 kb on - strand, within ECD_02342at 2430.373 kb on - strand, within ECD_02342at 2430.373 kb on - strand, within ECD_02342at 2430.469 kb on + strand, within ECD_02342at 2430.796 kb on + strand, within ECD_02342at 2430.796 kb on + strand, within ECD_02342at 2431.087 kb on - strand, within ECD_02342at 2431.137 kb on - strandat 2431.257 kb on + strandat 2431.297 kb on + strandat 2431.352 kb on + strandat 2431.421 kb on + strand, within ECD_02343at 2431.421 kb on + strand, within ECD_02343at 2431.421 kb on + strand, within ECD_02343at 2431.422 kb on - strand, within ECD_02343at 2431.422 kb on - strand, within ECD_02343at 2431.661 kb on - strand, within ECD_02343at 2431.724 kb on - strand, within ECD_02343at 2431.889 kb on - strand, within ECD_02343at 2431.966 kb on - strand, within ECD_02343

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,428,926 - ECD_02341 0.31 -1.6
2,428,930 - ECD_02341 0.32 -1.1
2,428,930 - ECD_02341 0.32 -0.0
2,428,930 - ECD_02341 0.32 -0.1
2,428,930 - ECD_02341 0.32 -0.7
2,428,946 - ECD_02341 0.33 -1.4
2,429,119 - ECD_02341 0.46 +1.6
2,429,231 + ECD_02341 0.54 -0.9
2,429,232 - ECD_02341 0.54 -1.7
2,429,328 - ECD_02341 0.61 -1.2
2,429,606 + ECD_02341 0.81 -1.2
2,429,825 + -1.9
2,429,827 + +1.2
2,429,827 + -2.6
2,429,828 - -1.0
2,429,828 - -1.9
2,429,851 + -1.5
2,429,859 + -3.1
2,429,859 + +1.6
2,429,933 + -1.2
2,429,947 + -0.4
2,430,001 - +0.9
2,430,167 - ECD_02342 0.21 -0.1
2,430,279 + ECD_02342 0.29 -1.0
2,430,280 - ECD_02342 0.29 -0.6
2,430,372 + ECD_02342 0.36 -3.1
2,430,373 - ECD_02342 0.36 -1.0
2,430,373 - ECD_02342 0.36 -0.3
2,430,373 - ECD_02342 0.36 -0.3
2,430,469 + ECD_02342 0.43 -2.4
2,430,796 + ECD_02342 0.66 -3.2
2,430,796 + ECD_02342 0.66 -1.2
2,431,087 - ECD_02342 0.87 -0.5
2,431,137 - +0.2
2,431,257 + -0.5
2,431,297 + +0.6
2,431,352 + -1.8
2,431,421 + ECD_02343 0.12 -0.9
2,431,421 + ECD_02343 0.12 -1.0
2,431,421 + ECD_02343 0.12 -0.4
2,431,422 - ECD_02343 0.12 +0.4
2,431,422 - ECD_02343 0.12 +0.3
2,431,661 - ECD_02343 0.32 -0.2
2,431,724 - ECD_02343 0.37 -1.5
2,431,889 - ECD_02343 0.50 -1.7
2,431,966 - ECD_02343 0.57 -0.9

Or see this region's nucleotide sequence