Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02341 and ECD_02342 are separated by 11 nucleotides ECD_02342 and ECD_02343 overlap by 4 nucleotides
ECD_02341: ECD_02341 - ethanolamine ammonia-lyase, large subunit, heavy chain, at 2,428,498 to 2,429,859
_02341
ECD_02342: ECD_02342 - reactivating factor for ethanolamine ammonia lyase, at 2,429,871 to 2,431,274
_02342
ECD_02343: ECD_02343 - ethanolamine transporter, at 2,431,271 to 2,432,497
_02343
Position (kb)
2429
2430
2431
2432 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2428.926 kb on - strand, within ECD_02341 at 2428.930 kb on - strand, within ECD_02341 at 2428.930 kb on - strand, within ECD_02341 at 2428.930 kb on - strand, within ECD_02341 at 2428.930 kb on - strand, within ECD_02341 at 2428.946 kb on - strand, within ECD_02341 at 2429.119 kb on - strand, within ECD_02341 at 2429.231 kb on + strand, within ECD_02341 at 2429.232 kb on - strand, within ECD_02341 at 2429.328 kb on - strand, within ECD_02341 at 2429.606 kb on + strand, within ECD_02341 at 2429.825 kb on + strand at 2429.827 kb on + strand at 2429.827 kb on + strand at 2429.828 kb on - strand at 2429.828 kb on - strand at 2429.851 kb on + strand at 2429.859 kb on + strand at 2429.859 kb on + strand at 2429.933 kb on + strand at 2429.947 kb on + strand at 2430.001 kb on - strand at 2430.167 kb on - strand, within ECD_02342 at 2430.279 kb on + strand, within ECD_02342 at 2430.280 kb on - strand, within ECD_02342 at 2430.372 kb on + strand, within ECD_02342 at 2430.373 kb on - strand, within ECD_02342 at 2430.373 kb on - strand, within ECD_02342 at 2430.373 kb on - strand, within ECD_02342 at 2430.469 kb on + strand, within ECD_02342 at 2430.796 kb on + strand, within ECD_02342 at 2430.796 kb on + strand, within ECD_02342 at 2431.087 kb on - strand, within ECD_02342 at 2431.137 kb on - strand at 2431.257 kb on + strand at 2431.297 kb on + strand at 2431.352 kb on + strand at 2431.421 kb on + strand, within ECD_02343 at 2431.421 kb on + strand, within ECD_02343 at 2431.421 kb on + strand, within ECD_02343 at 2431.422 kb on - strand, within ECD_02343 at 2431.422 kb on - strand, within ECD_02343 at 2431.661 kb on - strand, within ECD_02343 at 2431.724 kb on - strand, within ECD_02343 at 2431.889 kb on - strand, within ECD_02343 at 2431.966 kb on - strand, within ECD_02343
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,428,926 - ECD_02341 0.31 -1.6 2,428,930 - ECD_02341 0.32 -1.1 2,428,930 - ECD_02341 0.32 -0.0 2,428,930 - ECD_02341 0.32 -0.1 2,428,930 - ECD_02341 0.32 -0.7 2,428,946 - ECD_02341 0.33 -1.4 2,429,119 - ECD_02341 0.46 +1.6 2,429,231 + ECD_02341 0.54 -0.9 2,429,232 - ECD_02341 0.54 -1.7 2,429,328 - ECD_02341 0.61 -1.2 2,429,606 + ECD_02341 0.81 -1.2 2,429,825 + -1.9 2,429,827 + +1.2 2,429,827 + -2.6 2,429,828 - -1.0 2,429,828 - -1.9 2,429,851 + -1.5 2,429,859 + -3.1 2,429,859 + +1.6 2,429,933 + -1.2 2,429,947 + -0.4 2,430,001 - +0.9 2,430,167 - ECD_02342 0.21 -0.1 2,430,279 + ECD_02342 0.29 -1.0 2,430,280 - ECD_02342 0.29 -0.6 2,430,372 + ECD_02342 0.36 -3.1 2,430,373 - ECD_02342 0.36 -1.0 2,430,373 - ECD_02342 0.36 -0.3 2,430,373 - ECD_02342 0.36 -0.3 2,430,469 + ECD_02342 0.43 -2.4 2,430,796 + ECD_02342 0.66 -3.2 2,430,796 + ECD_02342 0.66 -1.2 2,431,087 - ECD_02342 0.87 -0.5 2,431,137 - +0.2 2,431,257 + -0.5 2,431,297 + +0.6 2,431,352 + -1.8 2,431,421 + ECD_02343 0.12 -0.9 2,431,421 + ECD_02343 0.12 -1.0 2,431,421 + ECD_02343 0.12 -0.4 2,431,422 - ECD_02343 0.12 +0.4 2,431,422 - ECD_02343 0.12 +0.3 2,431,661 - ECD_02343 0.32 -0.2 2,431,724 - ECD_02343 0.37 -1.5 2,431,889 - ECD_02343 0.50 -1.7 2,431,966 - ECD_02343 0.57 -0.9
Or see this region's nucleotide sequence