Strain Fitness in Escherichia coli BL21 around ECD_02109

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02108 and ECD_02109 overlap by 1 nucleotidesECD_02109 and ECD_02110 are separated by 1 nucleotides ECD_02108: ECD_02108 - microcin C ABC transporter permease, at 2,169,028 to 2,170,122 _02108 ECD_02109: ECD_02109 - microcin C ABC transporter permease, at 2,170,122 to 2,171,147 _02109 ECD_02110: ECD_02110 - microcin C ABC transporter ATPase, at 2,171,149 to 2,172,738 _02110 Position (kb) 2170 2171 2172Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2169.235 kb on - strand, within ECD_02108at 2169.335 kb on - strand, within ECD_02108at 2169.466 kb on - strand, within ECD_02108at 2169.510 kb on + strand, within ECD_02108at 2169.795 kb on + strand, within ECD_02108at 2169.830 kb on + strand, within ECD_02108at 2170.427 kb on + strand, within ECD_02109at 2170.717 kb on + strand, within ECD_02109at 2170.717 kb on + strand, within ECD_02109at 2170.877 kb on + strand, within ECD_02109at 2170.927 kb on + strand, within ECD_02109at 2170.931 kb on + strand, within ECD_02109at 2171.135 kb on + strandat 2171.214 kb on + strandat 2171.214 kb on + strandat 2171.215 kb on - strandat 2171.679 kb on - strand, within ECD_02110at 2171.679 kb on - strand, within ECD_02110at 2171.903 kb on - strand, within ECD_02110at 2171.916 kb on - strand, within ECD_02110at 2172.099 kb on - strand, within ECD_02110

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,169,235 - ECD_02108 0.19 -0.9
2,169,335 - ECD_02108 0.28 -0.2
2,169,466 - ECD_02108 0.40 -1.4
2,169,510 + ECD_02108 0.44 -1.6
2,169,795 + ECD_02108 0.70 -2.2
2,169,830 + ECD_02108 0.73 -1.9
2,170,427 + ECD_02109 0.30 -1.5
2,170,717 + ECD_02109 0.58 -1.3
2,170,717 + ECD_02109 0.58 -2.2
2,170,877 + ECD_02109 0.74 -0.3
2,170,927 + ECD_02109 0.78 -0.7
2,170,931 + ECD_02109 0.79 +0.6
2,171,135 + -2.4
2,171,214 + -0.5
2,171,214 + -2.9
2,171,215 - -1.3
2,171,679 - ECD_02110 0.33 +2.5
2,171,679 - ECD_02110 0.33 -0.2
2,171,903 - ECD_02110 0.47 -0.2
2,171,916 - ECD_02110 0.48 +0.4
2,172,099 - ECD_02110 0.60 -0.9

Or see this region's nucleotide sequence