Strain Fitness in Escherichia coli BL21 around ECD_02072

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02070 and ECD_02071 overlap by 4 nucleotidesECD_02071 and ECD_02072 are separated by 129 nucleotidesECD_02072 and ECD_02073 are separated by 149 nucleotidesECD_02073 and ECD_02074 are separated by 2 nucleotides ECD_02070: ECD_02070 - UPF0299 family inner membrane protein, at 2,125,528 to 2,125,926 _02070 ECD_02071: ECD_02071 - LrgB family inner membrane protein, at 2,125,923 to 2,126,618 _02071 ECD_02072: ECD_02072 - cytidine/deoxycytidine deaminase, at 2,126,748 to 2,127,632 _02072 ECD_02073: ECD_02073 - DUF218 superfamily vancomycin high temperature exclusion protein, at 2,127,782 to 2,128,501 _02073 ECD_02074: ECD_02074 - DUF2542 family protein, at 2,128,504 to 2,128,743 _02074 Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -3 -2 -1 0 1at 2125.880 kb on + strand, within ECD_02070at 2126.085 kb on + strand, within ECD_02071at 2126.153 kb on - strand, within ECD_02071at 2126.155 kb on - strand, within ECD_02071at 2126.164 kb on + strand, within ECD_02071at 2126.412 kb on - strand, within ECD_02071at 2126.432 kb on + strand, within ECD_02071at 2126.438 kb on + strand, within ECD_02071at 2126.531 kb on + strand, within ECD_02071at 2126.532 kb on - strand, within ECD_02071at 2126.649 kb on - strandat 2126.649 kb on - strandat 2126.689 kb on + strandat 2126.691 kb on + strandat 2126.734 kb on + strandat 2126.814 kb on - strandat 2126.829 kb on + strandat 2127.119 kb on + strand, within ECD_02072at 2127.226 kb on - strand, within ECD_02072at 2127.263 kb on + strand, within ECD_02072at 2127.363 kb on + strand, within ECD_02072at 2127.364 kb on - strand, within ECD_02072at 2127.364 kb on - strand, within ECD_02072at 2127.369 kb on - strand, within ECD_02072at 2127.410 kb on + strand, within ECD_02072at 2127.501 kb on + strand, within ECD_02072at 2127.630 kb on + strandat 2127.810 kb on + strandat 2127.882 kb on - strand, within ECD_02073at 2127.882 kb on - strand, within ECD_02073at 2127.883 kb on + strand, within ECD_02073at 2127.884 kb on - strand, within ECD_02073at 2127.884 kb on - strand, within ECD_02073at 2127.975 kb on - strand, within ECD_02073at 2128.010 kb on + strand, within ECD_02073at 2128.035 kb on + strand, within ECD_02073at 2128.315 kb on - strand, within ECD_02073

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,125,880 + ECD_02070 0.88 -0.9
2,126,085 + ECD_02071 0.23 +0.5
2,126,153 - ECD_02071 0.33 -2.7
2,126,155 - ECD_02071 0.33 -2.6
2,126,164 + ECD_02071 0.35 -0.2
2,126,412 - ECD_02071 0.70 -0.6
2,126,432 + ECD_02071 0.73 -0.4
2,126,438 + ECD_02071 0.74 -0.9
2,126,531 + ECD_02071 0.87 -0.4
2,126,532 - ECD_02071 0.88 -1.0
2,126,649 - -2.4
2,126,649 - -0.5
2,126,689 + -0.4
2,126,691 + +0.4
2,126,734 + -0.9
2,126,814 - -1.2
2,126,829 + -1.5
2,127,119 + ECD_02072 0.42 -0.8
2,127,226 - ECD_02072 0.54 -0.2
2,127,263 + ECD_02072 0.58 +0.2
2,127,363 + ECD_02072 0.69 -1.0
2,127,364 - ECD_02072 0.70 -0.4
2,127,364 - ECD_02072 0.70 -0.6
2,127,369 - ECD_02072 0.70 -2.0
2,127,410 + ECD_02072 0.75 -1.4
2,127,501 + ECD_02072 0.85 -1.0
2,127,630 + +0.9
2,127,810 + +0.1
2,127,882 - ECD_02073 0.14 -1.1
2,127,882 - ECD_02073 0.14 +1.1
2,127,883 + ECD_02073 0.14 -1.8
2,127,884 - ECD_02073 0.14 +1.4
2,127,884 - ECD_02073 0.14 -3.0
2,127,975 - ECD_02073 0.27 -1.8
2,128,010 + ECD_02073 0.32 -0.6
2,128,035 + ECD_02073 0.35 -2.8
2,128,315 - ECD_02073 0.74 +0.2

Or see this region's nucleotide sequence