Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02018 and ECD_02019 are separated by 3 nucleotides ECD_02019 and ECD_02020 are separated by 30 nucleotides ECD_02020 and ECD_02021 are separated by 9 nucleotides ECD_02021 and ECD_02024 are separated by 28 nucleotides
ECD_02018: ECD_02018 - galactitol-specific enzyme IIC component of PTS, at 2,070,726 to 2,072,081
_02018
ECD_02019: ECD_02019 - galactitol-specific enzyme IIB component of PTS, at 2,072,085 to 2,072,369
_02019
ECD_02020: ECD_02020 - galactitol-specific enzyme IIA component of PTS, at 2,072,400 to 2,072,852
_02020
ECD_02021: ECD_02021 - D-tagatose 1,6-bisphosphate aldolase 2, subunit, at 2,072,862 to 2,074,124
_02021
ECD_02024: ECD_02024 - D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit, at 2,074,153 to 2,075,007
_02024
Position (kb)
2072
2073
2074
2075 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2072.095 kb on - strand at 2072.649 kb on - strand, within ECD_02020 at 2072.941 kb on - strand at 2072.941 kb on - strand at 2073.535 kb on - strand, within ECD_02021 at 2073.571 kb on - strand, within ECD_02021 at 2073.571 kb on - strand, within ECD_02021 at 2073.788 kb on - strand, within ECD_02021 at 2073.788 kb on - strand, within ECD_02021 at 2073.959 kb on - strand, within ECD_02021 at 2074.460 kb on + strand, within ECD_02024 at 2074.461 kb on - strand, within ECD_02024 at 2074.461 kb on - strand, within ECD_02024 at 2074.465 kb on - strand, within ECD_02024 at 2074.846 kb on - strand, within ECD_02024
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,072,095 - +1.8 2,072,649 - ECD_02020 0.55 +3.2 2,072,941 - +2.6 2,072,941 - +2.6 2,073,535 - ECD_02021 0.53 +2.1 2,073,571 - ECD_02021 0.56 +2.6 2,073,571 - ECD_02021 0.56 +1.7 2,073,788 - ECD_02021 0.73 +2.4 2,073,788 - ECD_02021 0.73 +1.5 2,073,959 - ECD_02021 0.87 +2.5 2,074,460 + ECD_02024 0.36 -0.7 2,074,461 - ECD_02024 0.36 +2.2 2,074,461 - ECD_02024 0.36 +2.6 2,074,465 - ECD_02024 0.36 +2.4 2,074,846 - ECD_02024 0.81 +2.5
Or see this region's nucleotide sequence