Strain Fitness in Escherichia coli BL21 around ECD_02021

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02018 and ECD_02019 are separated by 3 nucleotidesECD_02019 and ECD_02020 are separated by 30 nucleotidesECD_02020 and ECD_02021 are separated by 9 nucleotidesECD_02021 and ECD_02024 are separated by 28 nucleotides ECD_02018: ECD_02018 - galactitol-specific enzyme IIC component of PTS, at 2,070,726 to 2,072,081 _02018 ECD_02019: ECD_02019 - galactitol-specific enzyme IIB component of PTS, at 2,072,085 to 2,072,369 _02019 ECD_02020: ECD_02020 - galactitol-specific enzyme IIA component of PTS, at 2,072,400 to 2,072,852 _02020 ECD_02021: ECD_02021 - D-tagatose 1,6-bisphosphate aldolase 2, subunit, at 2,072,862 to 2,074,124 _02021 ECD_02024: ECD_02024 - D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit, at 2,074,153 to 2,075,007 _02024 Position (kb) 2072 2073 2074 2075Strain fitness (log2 ratio) -1 0 1 2 3at 2072.095 kb on - strandat 2072.649 kb on - strand, within ECD_02020at 2072.941 kb on - strandat 2072.941 kb on - strandat 2073.535 kb on - strand, within ECD_02021at 2073.571 kb on - strand, within ECD_02021at 2073.571 kb on - strand, within ECD_02021at 2073.788 kb on - strand, within ECD_02021at 2073.788 kb on - strand, within ECD_02021at 2073.959 kb on - strand, within ECD_02021at 2074.460 kb on + strand, within ECD_02024at 2074.461 kb on - strand, within ECD_02024at 2074.461 kb on - strand, within ECD_02024at 2074.465 kb on - strand, within ECD_02024at 2074.846 kb on - strand, within ECD_02024

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,072,095 - +1.8
2,072,649 - ECD_02020 0.55 +3.2
2,072,941 - +2.6
2,072,941 - +2.6
2,073,535 - ECD_02021 0.53 +2.1
2,073,571 - ECD_02021 0.56 +2.6
2,073,571 - ECD_02021 0.56 +1.7
2,073,788 - ECD_02021 0.73 +2.4
2,073,788 - ECD_02021 0.73 +1.5
2,073,959 - ECD_02021 0.87 +2.5
2,074,460 + ECD_02024 0.36 -0.7
2,074,461 - ECD_02024 0.36 +2.2
2,074,461 - ECD_02024 0.36 +2.6
2,074,465 - ECD_02024 0.36 +2.4
2,074,846 - ECD_02024 0.81 +2.5

Or see this region's nucleotide sequence