Strain Fitness in Escherichia coli BL21 around ECD_01967

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01966 and ECD_01967 are separated by 2 nucleotidesECD_01967 and ECD_01968 are separated by 5 nucleotides ECD_01966: ECD_01966 - colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase, at 2,032,497 to 2,034,659 _01966 ECD_01967: ECD_01967 - colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase, at 2,034,662 to 2,035,105 _01967 ECD_01968: ECD_01968 - colanic acid export protein; outer membrane auxillary lipoprotein, at 2,035,111 to 2,036,250 _01968 Position (kb) 2034 2035 2036Strain fitness (log2 ratio) -2 -1 0 1at 2033.824 kb on - strand, within ECD_01966at 2033.902 kb on + strand, within ECD_01966at 2034.060 kb on - strand, within ECD_01966at 2034.663 kb on + strandat 2034.880 kb on - strand, within ECD_01967at 2035.089 kb on - strandat 2035.099 kb on + strandat 2035.164 kb on + strandat 2035.224 kb on - strandat 2035.236 kb on - strand, within ECD_01968at 2035.298 kb on + strand, within ECD_01968at 2035.302 kb on + strand, within ECD_01968at 2035.730 kb on + strand, within ECD_01968at 2035.810 kb on - strand, within ECD_01968at 2035.860 kb on + strand, within ECD_01968at 2035.972 kb on - strand, within ECD_01968at 2036.063 kb on - strand, within ECD_01968

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,033,824 - ECD_01966 0.61 +0.6
2,033,902 + ECD_01966 0.65 -0.8
2,034,060 - ECD_01966 0.72 -0.9
2,034,663 + +0.9
2,034,880 - ECD_01967 0.49 -1.3
2,035,089 - -0.4
2,035,099 + -0.3
2,035,164 + -2.1
2,035,224 - +1.6
2,035,236 - ECD_01968 0.11 -0.2
2,035,298 + ECD_01968 0.16 -0.3
2,035,302 + ECD_01968 0.17 -0.5
2,035,730 + ECD_01968 0.54 -1.5
2,035,810 - ECD_01968 0.61 -2.0
2,035,860 + ECD_01968 0.66 -0.0
2,035,972 - ECD_01968 0.76 -1.3
2,036,063 - ECD_01968 0.84 -1.5

Or see this region's nucleotide sequence