Strain Fitness in Escherichia coli BL21 around ECD_01963

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01962 and ECD_01963 overlap by 26 nucleotidesECD_01963 and ECD_01964 overlap by 4 nucleotidesECD_01964 and ECD_01965 are separated by 2 nucleotides ECD_01962: ECD_01962 - putative colanic acid polymerase, at 2,028,668 to 2,029,885 _01962 ECD_01963: ECD_01963 - putative glycosyl transferase, at 2,029,860 to 2,031,077 _01963 ECD_01964: ECD_01964 - putative acyl transferase, at 2,031,074 to 2,031,562 _01964 ECD_01965: ECD_01965 - putative glycosyl transferase, at 2,031,565 to 2,032,404 _01965 Position (kb) 2029 2030 2031 2032Strain fitness (log2 ratio) -3 -2 -1 0 1at 2029.681 kb on + strand, within ECD_01962at 2029.836 kb on + strandat 2029.873 kb on + strandat 2029.885 kb on + strandat 2029.959 kb on + strandat 2030.123 kb on - strand, within ECD_01963at 2030.244 kb on - strand, within ECD_01963at 2030.252 kb on + strand, within ECD_01963at 2030.252 kb on + strand, within ECD_01963at 2030.253 kb on - strand, within ECD_01963at 2030.253 kb on - strand, within ECD_01963at 2030.253 kb on - strand, within ECD_01963at 2031.349 kb on + strand, within ECD_01964at 2031.353 kb on - strand, within ECD_01964at 2031.509 kb on + strand, within ECD_01964at 2031.642 kb on + strandat 2031.643 kb on - strandat 2031.942 kb on + strand, within ECD_01965at 2031.972 kb on - strand, within ECD_01965at 2032.046 kb on + strand, within ECD_01965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
remove
2,029,681 + ECD_01962 0.83 -1.1
2,029,836 + +0.2
2,029,873 + -2.0
2,029,885 + -0.3
2,029,959 + -1.3
2,030,123 - ECD_01963 0.22 -2.9
2,030,244 - ECD_01963 0.32 -0.1
2,030,252 + ECD_01963 0.32 -2.1
2,030,252 + ECD_01963 0.32 -0.7
2,030,253 - ECD_01963 0.32 -1.9
2,030,253 - ECD_01963 0.32 +1.7
2,030,253 - ECD_01963 0.32 -1.4
2,031,349 + ECD_01964 0.56 +0.1
2,031,353 - ECD_01964 0.57 -0.6
2,031,509 + ECD_01964 0.89 -0.3
2,031,642 + -0.6
2,031,643 - +1.0
2,031,942 + ECD_01965 0.45 -0.8
2,031,972 - ECD_01965 0.48 -2.3
2,032,046 + ECD_01965 0.57 -1.0

Or see this region's nucleotide sequence