Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01962 and ECD_01963 overlap by 26 nucleotides ECD_01963 and ECD_01964 overlap by 4 nucleotides ECD_01964 and ECD_01965 are separated by 2 nucleotides
ECD_01962: ECD_01962 - putative colanic acid polymerase, at 2,028,668 to 2,029,885
_01962
ECD_01963: ECD_01963 - putative glycosyl transferase, at 2,029,860 to 2,031,077
_01963
ECD_01964: ECD_01964 - putative acyl transferase, at 2,031,074 to 2,031,562
_01964
ECD_01965: ECD_01965 - putative glycosyl transferase, at 2,031,565 to 2,032,404
_01965
Position (kb)
2029
2030
2031
2032 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2029.681 kb on + strand, within ECD_01962 at 2029.836 kb on + strand at 2029.873 kb on + strand at 2029.885 kb on + strand at 2029.959 kb on + strand at 2030.123 kb on - strand, within ECD_01963 at 2030.244 kb on - strand, within ECD_01963 at 2030.252 kb on + strand, within ECD_01963 at 2030.252 kb on + strand, within ECD_01963 at 2030.253 kb on - strand, within ECD_01963 at 2030.253 kb on - strand, within ECD_01963 at 2030.253 kb on - strand, within ECD_01963 at 2031.349 kb on + strand, within ECD_01964 at 2031.353 kb on - strand, within ECD_01964 at 2031.509 kb on + strand, within ECD_01964 at 2031.642 kb on + strand at 2031.643 kb on - strand at 2031.942 kb on + strand, within ECD_01965 at 2031.972 kb on - strand, within ECD_01965 at 2032.046 kb on + strand, within ECD_01965
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,029,681 + ECD_01962 0.83 -1.1 2,029,836 + +0.2 2,029,873 + -2.0 2,029,885 + -0.3 2,029,959 + -1.3 2,030,123 - ECD_01963 0.22 -2.9 2,030,244 - ECD_01963 0.32 -0.1 2,030,252 + ECD_01963 0.32 -2.1 2,030,252 + ECD_01963 0.32 -0.7 2,030,253 - ECD_01963 0.32 -1.9 2,030,253 - ECD_01963 0.32 +1.7 2,030,253 - ECD_01963 0.32 -1.4 2,031,349 + ECD_01964 0.56 +0.1 2,031,353 - ECD_01964 0.57 -0.6 2,031,509 + ECD_01964 0.89 -0.3 2,031,642 + -0.6 2,031,643 - +1.0 2,031,942 + ECD_01965 0.45 -0.8 2,031,972 - ECD_01965 0.48 -2.3 2,032,046 + ECD_01965 0.57 -1.0
Or see this region's nucleotide sequence