Strain Fitness in Escherichia coli BL21 around ECD_01958

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01956 and ECD_01957 overlap by 4 nucleotidesECD_01957 and ECD_01958 are separated by 2 nucleotidesECD_01958 and ECD_01959 are separated by 2 nucleotides ECD_01956: ECD_01956 - putative glycosyl transferase, at 2,023,529 to 2,024,752 _01956 ECD_01957: ECD_01957 - GDP-mannose mannosyl hydrolase, at 2,024,749 to 2,025,228 _01957 ECD_01958: ECD_01958 - bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase, at 2,025,231 to 2,026,196 _01958 ECD_01959: ECD_01959 - GDP-D-mannose dehydratase, NAD(P)-binding, at 2,026,199 to 2,027,320 _01959 Position (kb) 2025 2026 2027Strain fitness (log2 ratio) -2 -1 0 1 2at 2024.535 kb on + strand, within ECD_01956at 2024.596 kb on - strand, within ECD_01956at 2024.626 kb on - strand, within ECD_01956at 2024.925 kb on - strand, within ECD_01957at 2024.963 kb on + strand, within ECD_01957at 2025.233 kb on - strandat 2025.271 kb on + strandat 2025.360 kb on - strand, within ECD_01958at 2025.748 kb on + strand, within ECD_01958at 2025.869 kb on + strand, within ECD_01958at 2025.870 kb on - strand, within ECD_01958at 2026.098 kb on + strand, within ECD_01958at 2026.099 kb on - strand, within ECD_01958at 2026.228 kb on - strandat 2026.544 kb on + strand, within ECD_01959at 2026.620 kb on - strand, within ECD_01959at 2026.620 kb on - strand, within ECD_01959at 2026.833 kb on + strand, within ECD_01959at 2027.017 kb on + strand, within ECD_01959at 2027.120 kb on - strand, within ECD_01959at 2027.120 kb on - strand, within ECD_01959

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,024,535 + ECD_01956 0.82 -0.1
2,024,596 - ECD_01956 0.87 +1.1
2,024,626 - ECD_01956 0.90 -0.1
2,024,925 - ECD_01957 0.37 +2.2
2,024,963 + ECD_01957 0.45 -0.5
2,025,233 - +2.3
2,025,271 + +0.7
2,025,360 - ECD_01958 0.13 +0.1
2,025,748 + ECD_01958 0.54 -0.1
2,025,869 + ECD_01958 0.66 -0.6
2,025,870 - ECD_01958 0.66 +1.3
2,026,098 + ECD_01958 0.90 +1.3
2,026,099 - ECD_01958 0.90 +1.5
2,026,228 - -0.2
2,026,544 + ECD_01959 0.31 -2.4
2,026,620 - ECD_01959 0.38 +1.2
2,026,620 - ECD_01959 0.38 +1.6
2,026,833 + ECD_01959 0.57 +1.3
2,027,017 + ECD_01959 0.73 -1.1
2,027,120 - ECD_01959 0.82 -0.5
2,027,120 - ECD_01959 0.82 -2.3

Or see this region's nucleotide sequence