Strain Fitness in Escherichia coli BL21 around ECD_01932

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01931 and ECD_01932 are separated by 163 nucleotidesECD_01932 and ECD_01933 are separated by 33 nucleotides ECD_01931: ECD_01931 - 6-phosphogluconate dehydrogenase, decarboxylating, at 1,995,664 to 1,997,070 _01931 ECD_01932: ECD_01932 - Phosphomannomutase, at 1,997,234 to 1,998,598 _01932 ECD_01933: ECD_01933 - Mannose-1-phosphate guanylyltransferase, at 1,998,632 to 2,000,056 _01933 Position (kb) 1997 1998 1999Strain fitness (log2 ratio) -3 -2 -1 0 1at 1996.383 kb on - strand, within ECD_01931at 1996.556 kb on + strand, within ECD_01931at 1996.557 kb on - strand, within ECD_01931at 1996.651 kb on - strand, within ECD_01931at 1996.711 kb on - strand, within ECD_01931at 1996.803 kb on - strand, within ECD_01931at 1996.990 kb on - strandat 1997.076 kb on - strandat 1997.126 kb on - strandat 1997.126 kb on - strandat 1997.126 kb on - strandat 1997.150 kb on - strandat 1997.186 kb on - strandat 1997.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,996,383 - ECD_01931 0.51 -1.2
1,996,556 + ECD_01931 0.63 -0.6
1,996,557 - ECD_01931 0.63 -1.1
1,996,651 - ECD_01931 0.70 -1.0
1,996,711 - ECD_01931 0.74 -0.3
1,996,803 - ECD_01931 0.81 -2.5
1,996,990 - -2.2
1,997,076 - -1.2
1,997,126 - +0.5
1,997,126 - -1.1
1,997,126 - -3.4
1,997,150 - -0.1
1,997,186 - -0.1
1,997,235 + -1.1

Or see this region's nucleotide sequence