Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01884 and ECD_01885 are separated by 132 nucleotides ECD_01885 and ECD_01886 are separated by 108 nucleotides ECD_01886 and ECD_01887 are separated by 0 nucleotides ECD_01887 and ECD_01888 are separated by 256 nucleotides
ECD_01884: ECD_01884 - response regulator family protein, at 1,943,299 to 1,943,970
_01884
ECD_01885: ECD_01885 - hydroxyisourate hydrolase, at 1,944,103 to 1,944,516
_01885
ECD_01886: ECD_01886 - membrane-anchored, periplasmic TMAO, DMSO reductase, at 1,944,625 to 1,945,629
_01886
ECD_01887: ECD_01887 - inner membrane heme subunit for periplasmic YedYZ reductase, at 1,945,630 to 1,946,265
_01887
ECD_01888: ECD_01888 - zinc and cadmium binding protein, periplasmic, at 1,946,522 to 1,947,172
_01888
Position (kb) 1944
1945
1946 Strain fitness (log2 ratio) -2
-1
0
1 at 1944.099 kb on - strand at 1944.099 kb on - strand at 1944.167 kb on - strand, within ECD_01885 at 1944.525 kb on + strand at 1945.228 kb on + strand, within ECD_01886 at 1945.234 kb on + strand, within ECD_01886 at 1945.235 kb on - strand, within ECD_01886 at 1945.875 kb on - strand, within ECD_01887 at 1946.142 kb on + strand, within ECD_01887 at 1946.200 kb on + strand, within ECD_01887 at 1946.263 kb on + strand at 1946.271 kb on + strand at 1946.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,944,099 - +0.2 1,944,099 - -0.0 1,944,167 - ECD_01885 0.15 +0.5 1,944,525 + -1.1 1,945,228 + ECD_01886 0.60 -1.0 1,945,234 + ECD_01886 0.61 -0.6 1,945,235 - ECD_01886 0.61 -1.8 1,945,875 - ECD_01887 0.39 -2.2 1,946,142 + ECD_01887 0.81 +0.3 1,946,200 + ECD_01887 0.90 -1.4 1,946,263 + -1.6 1,946,271 + -1.0 1,946,557 - -1.6
Or see this region's nucleotide sequence