Strain Fitness in Escherichia coli BL21 around ECD_01872

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01870 and ECD_01871 are separated by 78 nucleotidesECD_01871 and ECD_01872 are separated by 463 nucleotidesECD_01872 and ECD_01873 are separated by 171 nucleotidesECD_01873 and ECD_01874 are separated by 37 nucleotides ECD_01870: ECD_01870 - ferritin B, putative ferrous iron reservoir, at 1,932,067 to 1,932,570 _01870 ECD_01871: ECD_01871 - DUF2766 family protein, at 1,932,649 to 1,932,900 _01871 ECD_01872: ECD_01872 - lipoprotein, function unknown, at 1,933,364 to 1,933,687 _01872 ECD_01873: ECD_01873 - ferritin iron storage protein (cytoplasmic), at 1,933,859 to 1,934,356 _01873 ECD_01874: ECD_01874 - DUF2492 family protein, at 1,934,394 to 1,934,633 _01874 Position (kb) 1933 1934Strain fitness (log2 ratio) -2 -1 0 1 2at 1932.934 kb on + strandat 1932.935 kb on - strandat 1932.935 kb on - strandat 1933.066 kb on - strandat 1933.126 kb on - strandat 1933.395 kb on + strandat 1933.411 kb on + strand, within ECD_01872at 1933.411 kb on + strand, within ECD_01872at 1933.459 kb on + strand, within ECD_01872at 1933.459 kb on + strand, within ECD_01872at 1933.464 kb on + strand, within ECD_01872at 1933.836 kb on + strandat 1933.960 kb on + strand, within ECD_01873at 1934.058 kb on + strand, within ECD_01873at 1934.065 kb on + strand, within ECD_01873at 1934.225 kb on + strand, within ECD_01873at 1934.601 kb on - strand, within ECD_01874

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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1,932,934 + -0.4
1,932,935 - +2.6
1,932,935 - -2.0
1,933,066 - +1.4
1,933,126 - +1.8
1,933,395 + +0.0
1,933,411 + ECD_01872 0.15 -0.8
1,933,411 + ECD_01872 0.15 -2.1
1,933,459 + ECD_01872 0.29 -0.8
1,933,459 + ECD_01872 0.29 -1.3
1,933,464 + ECD_01872 0.31 -1.3
1,933,836 + -0.5
1,933,960 + ECD_01873 0.20 +0.1
1,934,058 + ECD_01873 0.40 +0.9
1,934,065 + ECD_01873 0.41 -0.9
1,934,225 + ECD_01873 0.73 -0.0
1,934,601 - ECD_01874 0.86 -1.7

Or see this region's nucleotide sequence