Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01870 and ECD_01871 are separated by 78 nucleotides ECD_01871 and ECD_01872 are separated by 463 nucleotides ECD_01872 and ECD_01873 are separated by 171 nucleotides ECD_01873 and ECD_01874 are separated by 37 nucleotides
ECD_01870: ECD_01870 - ferritin B, putative ferrous iron reservoir, at 1,932,067 to 1,932,570
_01870
ECD_01871: ECD_01871 - DUF2766 family protein, at 1,932,649 to 1,932,900
_01871
ECD_01872: ECD_01872 - lipoprotein, function unknown, at 1,933,364 to 1,933,687
_01872
ECD_01873: ECD_01873 - ferritin iron storage protein (cytoplasmic), at 1,933,859 to 1,934,356
_01873
ECD_01874: ECD_01874 - DUF2492 family protein, at 1,934,394 to 1,934,633
_01874
Position (kb)
1933
1934 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1932.934 kb on + strand at 1932.935 kb on - strand at 1932.935 kb on - strand at 1933.066 kb on - strand at 1933.126 kb on - strand at 1933.395 kb on + strand at 1933.411 kb on + strand, within ECD_01872 at 1933.411 kb on + strand, within ECD_01872 at 1933.459 kb on + strand, within ECD_01872 at 1933.459 kb on + strand, within ECD_01872 at 1933.464 kb on + strand, within ECD_01872 at 1933.836 kb on + strand at 1933.960 kb on + strand, within ECD_01873 at 1934.058 kb on + strand, within ECD_01873 at 1934.065 kb on + strand, within ECD_01873 at 1934.225 kb on + strand, within ECD_01873 at 1934.601 kb on - strand, within ECD_01874
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 1,932,934 + -0.4 1,932,935 - +2.6 1,932,935 - -2.0 1,933,066 - +1.4 1,933,126 - +1.8 1,933,395 + +0.0 1,933,411 + ECD_01872 0.15 -0.8 1,933,411 + ECD_01872 0.15 -2.1 1,933,459 + ECD_01872 0.29 -0.8 1,933,459 + ECD_01872 0.29 -1.3 1,933,464 + ECD_01872 0.31 -1.3 1,933,836 + -0.5 1,933,960 + ECD_01873 0.20 +0.1 1,934,058 + ECD_01873 0.40 +0.9 1,934,065 + ECD_01873 0.41 -0.9 1,934,225 + ECD_01873 0.73 -0.0 1,934,601 - ECD_01874 0.86 -1.7
Or see this region's nucleotide sequence